Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq16 140 3e-28 seq739 87.8 2e-12 >seq16 Length=240792 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| | || |||||| |||| Sbjct 42127 ATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTCG 42186 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| |||||| |||||||| || |||||||| |||||| Sbjct 42187 GATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCAA 42246 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||||||| | ||||| | |||||| | ||| || || Sbjct 42247 CAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAAC 42306 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || || | ||||| Sbjct 42307 ATCCAAAAAGAATCCACTCTCCACCTTGTGCT 42338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || || | || |||||| |||| || | || ||||| |||| Sbjct 41814 ATGCAAATATTCGTCAAAACGCTCACGGGTAAAACCATAACGCTTGAGGTGGAAGCGTCG 41873 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| ||||| || || |||||||| || ||| Sbjct 41874 GATACGATCGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATTCCACCAGATCAA 41933 Query 25119 CAGCGGATTATTTTTGCCGGCAAA 25142 ||||| |||| ||||| || ||| Sbjct 41934 CAGCGTCTTATCTTTGCTGGTAAA 41957 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/166 (72%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| ||||||||||||||| ||||| | |||||||| | ||||| |||| || || Sbjct 41141 CGGAGGAATGCAAATATTTGTTAAGACGCTCACCGGTAAGACGATCACCCTCGAGGTTGA 41200 Query 25052 GTCGTCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | | || || || |||||| || ||||||| | ||| |||||||| || || |||| Sbjct 41201 GGCTTCCGATACCATCGAGAATGTGAAAGCAAAGATTCA-GGACAAAGAGGGAATCCCAC 41259 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 | || || || || | || || || || || | || ||| |||| Sbjct 41260 CCGATCAGCAACGTCTGATCTTCGCTGGTAAGCTCTT-GAACATGA 41304 >seq739 Length=22138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/159 (73%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| ||||||| ||| | |||||| | |||||||| | Sbjct 1295 AACAATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGC 1354 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || || || ||||| |||| | ||||||| ||| || || ||||| || |||| Sbjct 1355 ATCGGATACAATCGAAAATGTCA---AGGCAAAAATTCA-GGATAAGGAAGGCATCCCAC 1410 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAG 25149 | |||||||| || | || || || || || || ||| Sbjct 1411 CAGACCAACAACGTTTGATCTTCGCTGGTAAGTAACTAG 1449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433106163824075