Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq16 131 1e-25 seq6064 120 3e-22 seq739 96.9 3e-15 >seq16 Length=240792 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || ||||||| || ||| |||| ||||| ||||| | | Sbjct 42127 ATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTCG 42186 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||| || ||||| ||||| |||||||| || ||| Sbjct 42187 GATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCAA 42246 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||||||||| | || || |||||| ||||||| || ||| Sbjct 42247 CAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAAC 42306 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 42307 ATCCAAAAAGAATCCAC 42323 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || |||||||| | || ||||| |||||| | | Sbjct 41814 ATGCAAATATTCGTCAAAACGCTCACGGGTAAAACCATAACGCTTGAGGTGGAAGCGTCG 41873 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || ||||||||||||||||||||||| |||||| Sbjct 41874 GATACGATCGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATTCCACCAGATCAA 41933 Query 22339 CAACGTCTTATATTTGCCGGCAAA 22362 || |||||||| ||||| || ||| Sbjct 41934 CAGCGTCTTATCTTTGCTGGTAAA 41957 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || | |||||||| ||| |||| || || || || | || Sbjct 41148 ATGCAAATATTTGTTAAGACGCTCACCGGTAAGACGATCACCCTCGAGGTTGAGGCTTCC 41207 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| ||||| ||||| ||||| || ||||||||||| Sbjct 41208 GATACCATCGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGAATCCCACCCGATCAG 41267 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||||| || || || || || Sbjct 41268 CAACGTCTGATCTTCGCTGGTAA 41290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| ||||| ||| ||||||| ||||| || | | Sbjct 40794 ATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATCACTCTGGAAGTTGAGGCGTCG 40853 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| || || ||||| || || ||||||||||||||| Sbjct 40854 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAAGGAATTCCACCCGATCAA 40913 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || || || || Sbjct 40914 CAACGTCTCATCTTCGCTGG 40933 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | |||||||| ||| |||| ||||| |||||| | || Sbjct 41492 ATGCAGATCTTCGTTAAGACGCTTACCGGTAAGACGATCACCCTTGAGGTGGAAGCATCC 41551 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || ||||||||||| || |||||||| ||||| Sbjct 41552 GACACGATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAG 41611 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 41612 CAACGACTCATCTTTGCGGG 41631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| | || || || ||| |||| ||||| ||||| | | Sbjct 40443 ATGCAAATTTTCGTTAAAACGCTGACTGGCAAGACGATCACCCTTGAGGTGGAGGCTTCG 40502 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || ||||| |||||||| || || || || |||||| Sbjct 40503 GATACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCAGATCAA 40562 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || || || || Sbjct 40563 CAACGTCTGATCTTCGCTGG 40582 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || || || |||| || || ||||| | | Sbjct 40105 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACTATCACACTCGAGGTGGAGGCTTCG 40164 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| ||||| |||||||| |||||||| || || ||||| Sbjct 40165 GACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 40224 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || || || || Sbjct 40225 CAACGTCTGATCTTCGCTGG 40244 >seq6064 Length=3385 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||| ||||| || || || || || |||| ||||| ||| | || ||||| || || Sbjct 316 GTAAAAATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATAACCCTTGAGGTTGAG 257 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | |||||||| | || || ||||| || |||||||| |||||||||||||| || Sbjct 256 TCATCCGATACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATTCCTCCT 197 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAA 22361 |||||||||||||| ||||||||||| || Sbjct 196 GATCAACAACGTCTGATATTTGCCGGTAA 168 >seq739 Length=22138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| |||||| |||| || ||||||||| | | Sbjct 1299 ATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCATCG 1358 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| ||||||||| || ||||| || || ||||| || ||| Sbjct 1359 GATACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGACCAA 1418 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || || || || || Sbjct 1419 CAACGTTTGATCTTCGCTGGTAA 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419513126152825