Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq16 161 2e-34 seq6064 122 2e-22 seq739 118 2e-21 seq19194 89.7 9e-13 seq1030 87.8 3e-12 seq14215 86.0 1e-11 seq10968 86.0 1e-11 seq8721 86.0 1e-11 seq2824 86.0 1e-11 >seq16 Length=240792 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| || ||||| ||||||||||||||||| |||||| Sbjct 42353 CCTCCACGGAGACGGAGCACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAG 42294 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || |||||||| ||||| | |||||||| |||||| Sbjct 42293 AGGGTGCGACCGTCTTCGAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGGA 42234 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || ||||| || || || ||||| || |||||| || || | | || || Sbjct 42233 ATGCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCACC 42174 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || |||||||| ||||| |||||||| Sbjct 42173 TCAAGGGTGATCGTCTTCCCGGTTAGGGTCTTCACGAAGATCTGCAT 42127 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||| | |||||| ||||||||||| ||||| ||||| || ||||||||| Sbjct 40933 CCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCC 40874 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||| || | | || ||||||| ||||| || || ||||| ||| Sbjct 40873 TTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAGG 40814 Query 68442 GTCTTGACGAATATCTGCATT 68462 || |||||||| ||||||||| Sbjct 40813 GTTTTGACGAAGATCTGCATT 40793 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||| | || || || ||||||| ||| || || |||||||| |||||||||||||| ||| Sbjct 41637 TGCGTACCCGCAAAGATGAGTCGTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATC 41578 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || || || || |||||| ||||| | || ||| || || | |||||| || || || Sbjct 41577 TTGGCTTTCACATTCTCGATCGTGTCGGATGCTTCCACCTCAAGGGTGATCGTCTTACCG 41518 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| ||||| |||||||| Sbjct 41517 GTAAGCGTCTTAACGAAGATCTGCAT 41492 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | ||||| || |||||||| || ||||||||||| ||||| Sbjct 41956 TTACCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATACCCTCCTTGTCTTGGATCTTC 41897 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || |||||| || || | | ||| || || | || |||||||| |||||| Sbjct 41896 GCCTTCACATTCTCGATCGTATCCGACGCTTCCACCTCAAGCGTTATGGTTTTACCCGTG 41837 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| ||||| Sbjct 41836 AGCGTTTTGACGAATATTTGCAT 41814 Score = 102 bits (112), Expect = 2e-16 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 || ||| ||| || |||| || ||||| || || | ||| || |||||||| || || | Sbjct 41306 TCTCATGTTC-AAGAGCTTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCT 41248 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 | ||||| ||||||||||| || || ||||||||| || | | || || || | || Sbjct 41247 CTTTGTCCTGAATCTTTGCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGG 41188 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || ||||| ||||| || ||||| |||||| Sbjct 41187 TGATCGTCTTACCGGTGAGCGTCTTAACAAATATTTGCATT 41147 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | |||||| || || || || ||||||||||| |||||||| ||| Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCC 40523 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| |||||| || || | | || || || | |||||| || || || || || Sbjct 40522 TTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTCAGC 40463 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| Sbjct 40462 GTTTTAACGAAAATTTGCAT 40443 >seq6064 Length=3385 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| ||||| || | |||||| || || ||||| || ||||| ||||||||||| Sbjct 167 CTTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTT 226 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || ||||| |||||||| || | ||| || || || | ||| || || || ||||| Sbjct 227 GGCTTTGACATTTTCGATGGTATCGGATGACTCAACCTCAAGGGTTATCGTCTTACCCGT 286 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||||| ||||||||| Sbjct 287 TAGGGTCTTGACGAAGATCTGCATT 311 >seq739 Length=22138 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || | | ||||||||| ||||| ||||||||||| || ||||| || Sbjct 1442 CTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTT 1383 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||| ||||| || || | || ||| ||||| | ||||| ||||| || || Sbjct 1382 TGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTTTGCCGGT 1323 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||| || |||||| Sbjct 1322 CAGTGTCTTGACGAAAATTTGCATT 1298 >seq19194 Length=1157 Score = 89.7 bits (98), Expect = 9e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 84440 TCTGGGTGACGAGAGCG--CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTT 84497 |||||||| | | |||| |||||||||||||||||| ||||| | || ||||||| || Sbjct 716 TCTGGGTGGCAACAGCGTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 657 Query 84498 GTGGTCGTGGGTTCGAGCCCCACATCGG 84525 | |||| ||||||||||||| |||||| Sbjct 656 GCTGTCGCGGGTTCGAGCCCCGCATCGG 629 >seq1030 Length=16607 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 84449 CGAGAGCG-CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 84507 |||| ||| |||||||||||||||||| ||||| | || ||||||| || | |||| || Sbjct 7168 CGAGTGCGGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGG 7227 Query 84508 GTTCGAGCCCCACATCGGGC 84527 ||||||||||| |||||||| Sbjct 7228 GTTCGAGCCCCGCATCGGGC 7247 >seq14215 Length=1538 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 1000 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 941 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 940 CCCGCATCGGGC 929 >seq10968 Length=1959 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 1051 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 992 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 991 CCCGCATCGGGC 980 >seq8721 Length=2414 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 1101 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1042 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1041 CCCGCATCGGGC 1030 >seq2824 Length=6685 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 5993 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 5934 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 5933 CCCGCATCGGGC 5922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921138490638600