Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq16 170 5e-37 seq739 113 1e-19 seq6064 93.3 1e-13 >seq16 Length=240792 Score = 170 bits (188), Expect = 5e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || || | ||| |||||||||||| |||||||||| | Sbjct 42353 CCTCCACGGAGACGGAGCACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAG 42294 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | |||||| || ||||| || ||||||||||| ||| Sbjct 42293 AGGGTGCGACCGTCTTCGAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGGA 42234 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| ||||||||||| || ||||| || || || | ||| || || || Sbjct 42233 ATGCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCACC 42174 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 42173 TCAAGGGTGATCGTCTTCCCGGTTAGGGTCTTCACGAAGATCTGCAT 42127 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| ||||| |||||| ||| ||||||||||| |||||||| || || Sbjct 40933 CCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCC 40874 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | ||| || || ||||| || ||||||||||| || || || Sbjct 40873 TTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAGG 40814 Query 288454 GTCTTGACGAATATCTGCATT 288474 || |||||||| ||||||||| Sbjct 40813 GTTTTGACGAAGATCTGCATT 40793 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||||||||| || ||| ||||||||| ||||| ||||| || || Sbjct 41290 TTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCCTGAATCTTT 41231 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 |||||||| || || || | |||| | || || ||||| ||||||||||| ||||| Sbjct 41230 GCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGTG 41171 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || ||||| |||||| Sbjct 41170 AGCGTCTTAACAAATATTTGCATT 41147 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||||||||| |||||| ||||| ||||||||| || ||||| || || Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGA---TCTGGAGGGATTCCTTCCTTGTCCTGAATCTTG 40526 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | ||| | || || || || ||||||||||| || ||| Sbjct 40525 GCCTTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTC 40466 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||| Sbjct 40465 AGCGTTTTAACGAAAATTTGCAT 40443 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || || ||||| |||||||||||| ||| || || || || || ||||| || Sbjct 41957 TTTACCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATACCCTCCTTGTCTTGGATCTT 41898 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||| ||||| || || || | ||| || ||| || || ||||| || || || || || Sbjct 41897 CGCCTTCACATTCTCGATCGTATCCGACGCTTCCACCTCAAGCGTTATGGTTTTACCCGT 41838 Query 288450 CAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| ||||| Sbjct 41837 GAGCGTTTTGACGAATATTTGCAT 41814 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || || || ||| ||| || ||||| || || ||||| || ||| Sbjct 41631 CCCGCAAAGATGAGTCGTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATCTTGGCT 41572 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | ||| || || || ||||||||||| ||||| || Sbjct 41571 TTCACATTCTCGATCGTGTCGGATGCTTCCACCTCAAGGGTGATCGTCTTACCGGTAAGC 41512 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 41511 GTCTTAACGAAGATCTGCAT 41492 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||||||||| || || |||| ||||| || ||||| || |||||||| Sbjct 40244 CCAGCGAAGATCAGACGTTGCTG---ATCTGGAGGGATACCCTCTTTGTCTTGGATTTTG 40188 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || | || | || || ||||| ||||| ||||| || || Sbjct 40187 GCTTTGACGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTA 40128 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||| Sbjct 40127 AGTGTTTTCACGAAAATTTGCAT 40105 >seq739 Length=22138 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 288323 CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCT 288382 ||| || || || |||||||||| ||| ||||| |||||| ||||| ||||||| Sbjct 1449 CTAGTTACTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCT 1390 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 | ||||| || || || ||||| || | ||| | ||| ||||| || |||||||| | Sbjct 1389 GAATTTTTGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTT 1330 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | |||||||| ||||||||||| || |||||| Sbjct 1329 TGCCGGTCAGTGTCTTGACGAAAATTTGCATT 1298 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| || ||||| |||||| || ||||||||||| || ||| Sbjct 1782 TTACCAGCAAAGATCAACCGTTGTTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTC 1723 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | ||| || ||| || || | ||||||||| || |||||| Sbjct 1722 GCCTTTACATTCTCGATTGTATCTGACGCTTCGACCTCCAACGTGATCGTTTTGCCGGTC 1663 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || || ||||| Sbjct 1662 AGTGTCTTGACAAAAATTTGCAT 1640 >seq6064 Length=3385 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| | || || || || ||||| || || || Sbjct 168 TTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTTG 227 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || ||||| || | |||| || || || || || || |||||||| || || Sbjct 228 GCTTTGACATTTTCGATGGTATCGGATGACTCAACCTCAAGGGTTATCGTCTTACCCGTT 287 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 288 AGGGTCTTGACGAAGATCTGCATT 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179019522904390