Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq739 91.5 1e-13 seq16 82.4 7e-11 >seq739 Length=22138 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 126963 CTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCG 127022 |||| | || |||||| ||||||| || || || || || || ||||| ||||| ||| Sbjct 1449 CTAGTTACTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCC- 1391 Query 127023 TGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGT 127080 ||| ||| ||| |||| | ||||| || |||| | || || ||||| | || | ||| Sbjct 1390 TGAATTTTTGCCTTGACATTTTCGATTGTATCCGATGCT-TCCACTTCTAGTGTGATCGT 1332 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||||| || || || ||||| ||||| Sbjct 1331 TTTGCCGGTCAGTGTCTTGACGAAAATTTGCAT 1299 >seq16 Length=240792 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| |||||| || ||||||||||| || || ||||| |||||| ||| | | Sbjct 41290 TTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCC-TGAATCTT 41232 Query 127031 TGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| || | | |||| ||| || | | ||| || |||| ||| | ||| || ||||| Sbjct 41231 TGCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGT 41172 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| || ||||| Sbjct 41171 GAGCGTCTTAACAAATATTTGCAT 41148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475251132361200