Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq739 96.9 3e-15 seq16 89.7 5e-13 seq13514 86.0 6e-12 >seq739 Length=22138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||| ||||| || || |||||||| ||||| ||||||||| Sbjct 1441 TTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTTT 1382 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | || || || | || ||||| || || | |||||||||||| Sbjct 1381 GCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTTTGCCGGTC 1322 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||||||||| Sbjct 1321 AGTGTCTTGACGAAAATTTGCAT 1299 >seq16 Length=240792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| |||||||| || || || || || ||||| ||||| ||||| | Sbjct 40244 CCAGCGAAGATCAGACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTGGCT 40185 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 |||| || | || | |||||| |||| ||| || ||||| || | || ||||| || || Sbjct 40184 TTGA-CGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTAAG 40126 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||||||||| Sbjct 40125 TGTTTTCACGAAAATTTGCAT 40105 >seq13514 Length=1612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| |||| || || || || ||| |||| ||||| || ||||| | || | ||| Sbjct 222 CAAATCGAGACTGGTGTTCCTTATATGGTCTATAAAGATGCGTGCAATCGTAAGTCGAAT 281 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||| || || ||||| ||||| ||| | ||||| |||||||| | Sbjct 282 CAAAAGAATTTGGGCACCATCAAATGCTCCAATCTGTGCACTGAAATCGTCGAATACT-C 340 Query 123720 GATGCCGATC-AAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGT 123775 | || | | |||||||||| ||||||||||| |||| ||||| ||||||| | ||| Sbjct 341 GTCTCCAACCGAAGTGGCCGTTTGTAATTTGGCGTCGA-TTGCGTTGAATCGCTTCGT 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451765870069800