Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6064 109 2e-18 seq739 104 9e-17 seq28345 98.7 4e-15 seq3162 98.7 4e-15 seq16 87.8 7e-12 >seq6064 Length=3385 Score = 109 bits (120), Expect = 2e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || || ||||| || || || ||||| ||||| ||||| Sbjct 311 AATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATAACCCTTGAGGTTGAGTCATC 252 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| | | ||| || |||||||||||||| || |||||||||||||| Sbjct 251 CGATACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATTCCTCCTGATCA 192 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | || || Sbjct 191 ACAACGTCTGATATT 177 >seq739 Length=22138 Score = 104 bits (114), Expect = 9e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || |||||||| || ||||| || || || || || ||| |||| Sbjct 1298 AATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCATC 1357 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || ||| | | || ||||||||| ||||||||||| || || || || || Sbjct 1358 GGATACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGACCA 1417 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACT 391198 ||||||||| || ||| | || || |||| Sbjct 1418 ACAACGTTTGATCTTCGCTGGTAAGTAACT 1447 >seq28345 Length=745 Score = 98.7 bits (108), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 |||||||| || || || || || | || || || || ||||| ||||| || || || Sbjct 666 TATAAAGGAGAGACGAAGACGTTCACGCCCGAGGAGATCTCATCGATGGTACTGACCAAG 607 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| ||||| || || | | || ||||| | |||||||| | || || Sbjct 606 ATGAAGGAAACCGCTGAGGCGTTCTTGGGCAACCCAGTCAAGGATGCAGTGGTGACCGTG 547 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || ||||||||||| || | || || ||||| || || ||| | ||| ||||| ||| Sbjct 546 CCGGCTTATTTCAACGACTCGCAGCGTCAAGCCACCAAGGATTCCGGAGCGATTGCCGGT 487 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | ||||| || || || || || ||||| || || || ||| | || || ||| Sbjct 486 CTGAATGTGCTGCGTATCATCAACGAACCCACTGCTGCGGCTATCGCCTACGGA 433 >seq3162 Length=6033 Score = 98.7 bits (108), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 |||||||| || || || || || | || || || || ||||| ||||| || || || Sbjct 2507 TATAAAGGAGAGACGAAGACGTTCACGCCCGAGGAGATCTCATCGATGGTACTGACCAAG 2566 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| ||||| || || | | || ||||| | |||||||| | || || Sbjct 2567 ATGAAGGAAACCGCTGAGGCGTTCTTGGGCAACCCAGTCAAGGATGCAGTGGTGACCGTG 2626 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || ||||||||||| || | || || ||||| || || ||| | ||| ||||| ||| Sbjct 2627 CCGGCTTATTTCAACGACTCGCAGCGTCAAGCCACCAAGGATTCCGGAGCGATTGCCGGT 2686 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | ||||| || || || || || ||||| || || || ||| | || || ||| Sbjct 2687 CTGAATGTGCTGCGTATCATCAACGAACCCACTGCTGCGGCTATCGCCTACGGA 2740 >seq16 Length=240792 Score = 87.8 bits (96), Expect = 7e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || || ||||| || || ||||| || ||||| | || Sbjct 40793 AATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATCACTCTGGAAGTTGAGGCGTC 40852 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| | | || ||| || || || || ||||||||||| || ||||| Sbjct 40853 GGATACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAAGGAATTCCACCCGATCA 40912 Query 391169 ACAACGTTTAATTTTC 391184 ||||||| | || ||| Sbjct 40913 ACAACGTCTCATCTTC 40928 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| |||||||| || || || || ||||| || || | || Sbjct 40443 ATGCAAATTTTCGTTAAAACGCTGACTGGCAAGACGATCACCCTTGAGGTGGAGGCTTCG 40502 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | || || ||||| || ||||||||||| ||||| |||||| Sbjct 40503 GATACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCAGATCAA 40562 Query 391170 CAACGTTTAATTTTC 391184 |||||| | || ||| Sbjct 40563 CAACGTCTGATCTTC 40577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974655089966540