Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6082 311 7e-79 seq12312 125 5e-23 seq1550 120 2e-21 seq3162 113 3e-19 >seq6082 Length=3378 Score = 311 bits (344), Expect = 7e-79 Identities = 985/1496 (66%), Gaps = 48/1496 (3%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 |||||||| || |||||| | || | ||| |||||||| || ||||| || |||||||| Sbjct 272 GTTGATTTGTCTGCGGCACTAACGTGAAGTATACCATTAGCGTCCAAGTCGAATGTGACC 331 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 |||||||| ||||| || | | || ||||| || | || || |||||| Sbjct 332 TCAATTTGTGGGACACCACGTGGCGCTGGTGGAATTTGAGTGAGATCGAAACGTCCCAGC 391 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 | || || ||||| || | ||||| || ||| | | ||| ||| | || | | | Sbjct 392 TGGTTGTTGTCTTTGGTAAGGGCACGTTCTCCTTCGTACACTTGAATACTGACAGCTGGT 451 Query 517424 TGATTATCTGAATAAGTTGTAAA---TACTCTGGATTTTTTACAAGGAATTGTTGTGTTT 517480 |||||||| || || || || || | | || ||||| | || ||| || || Sbjct 452 TGATTATCAGAGTACGTGGTGAAGGTTTGTGTGCATTTTGTC---GGTATTCGGGTATTG 508 Query 517481 C-TATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 | | ||| || ||| |||||| ||| ||||| ||||| | || | || ||||| Sbjct 509 CGTTTCACTAGCGTTG-TCATAACACCGCCTGCCGTTTCAATGCCCAACGACAGAGGCTG 567 Query 517540 GACATCAACTAGGACAATAT-TTTGA---AGTTTTTCATCAGTTTGACCAACAAGAATAG 517595 || || || || | || | ||||| |||| | | | | | || || |||| Sbjct 568 AACGTCCACCAGCAAAACGTCTTTGACACAGTTGT-CTTGAACT---CCGCTCAGGATAG 623 Query 517596 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 517655 | ||||| | || ||||| |||||||| ||||| |||||||| | | | ||| |||| Sbjct 624 CGGCTTGGACTGCGGCACCGTATGCAACCGCTTCGTCAGGATTTATCGATAGATTCAGTT 683 Query 517656 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTC 517715 ||| ||| ||| |||| | || |||| | || || ||||| |||| || || | Sbjct 684 GTTTGCCACCGAAGAAATCCGTCAGTAGTTTTTGCACTTTTGGAATTCGAGTCGAGCCAC 743 Query 517716 CAACTAATACAATTTCATGCACCTG--TGATTTATCCAGTTTTGAATCCAATAAAACTTT 517773 | || | ||||| ||| | ||| || || ||| |||| | || ||| |||| Sbjct 744 CGACCAGTACAACTTCGTTCAC-TGAATG-TTTGTCCATACGGGCGTCGCGTAACGCTTT 801 Query 517774 TTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCT 517833 || || || ||||| | ||||| ||||| ||||||||||||||| ||| | Sbjct 802 CTCGACTGGCGCAAGAGTTTTTTGGAACAAATCTGAGCAAAGTTCTTCGAATCGAGCACG 861 Query 517834 AGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTT 517892 || | | |||| | || || | ||||| || | ||||||||| || | | || Sbjct 862 TGTTATAC-GACAGTTGAAGTCCAAACCTTCATGCAGACTATCAACTTCGATAATGGCTT 920 Query 517893 GAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG 517952 |||| || || || | ||||| ||||||||||| || || | || | || | | Sbjct 921 GAGTGGAGCTTGACAGGGTTCGTTTGGCACGTTCACACGCCGTACGAAGACGTCTCAGTG 980 Query 517953 CTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTC--TTGAAATCTTCAACACACCA 518010 | || ||| || || | ||| || || | ||||| | ||| | ||| | Sbjct 981 CACGAGCG--TTGTGTCTGATGTCTTTACGATGCTCACGTTTGAACTGTTCTAAACAATA 1038 Query 518011 TGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCT 518070 | || | ||||| || ||||||||||| ||||| | |||| || | || | | | Sbjct 1039 GTTCACCAAACGATCGTCGAAATCTTCACCACCCAAATGTGTATCACCGGCTGTTGATTT 1098 Query 518071 TACTTGGAAAAGTCCATCTTCAAGAGA----CAAAAGAGTTACATCATGGGTTCCACCAC 518126 |||| ||| ||| |||| |||| ||||| | ||||| || ||||||| Sbjct 1099 CACTTCGAACAGTGAGCCTTCT-GAGATGCTCAAAATGGACACATCGAATGTACCACCAC 1157 Query 518127 CCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAA 518186 ||| ||| || || | ||||| ||| || || ||||| ||||||||||| | Sbjct 1158 CCAAATCGAATATCAACACATTACGTTCACCATCCAACTTCTTATCGAGACCATACGCTA 1217 Query 518187 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 518246 ||| || || || |||||||| ||||| | | || ||||| |||||| || ||| Sbjct 1218 GAGCTGCGGCCGTCGGTTCATTGATAATACGTAGTGGTTTGAGACCCGCAATTATTGCTG 1277 Query 518247 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||||||| ||||| |||| |||| |||||| ||||| || || ||||| || ||||| | Sbjct 1278 CATCTTTTGTGGCCTGTCGCTGTGCATCGTTGAAATAGGCCGGTACAGTTATGACGGCTT 1337 Query 518307 CAGTTA-CTTCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCA 518363 | | | ||| | | |||| ||| ||||| || |||| |||||||| | ||||| Sbjct 1338 CCGAGACCTTGTGTTCCAA-ATA--CGCTTCGGCTGTTTCCTTCATTTTTAGCAGAATCA 1394 Query 518364 TTGATGAAATTTGTTCTGG--GGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAA 518420 |||| || || | ||| || ||| | | || ||| ||||| | | || || | Sbjct 1395 TTGACGAGATCTCTTCCGGATAGAACACT--TTACGTTCGCCTTTGA-AGGTCACCTCGA 1451 Query 518421 AATATGGTTTATTACCAACATT---AATAACTTTAAATGGCCAGTATTTCATATCTGATT 518477 ||||| || || | || || |||||||| ||||| | |||||| | Sbjct 1452 TGGCCGGTTTGTTGGCACCTTTTGAGATCACTTTAAACGGCCAATTACGCATATCGTTCT 1511 Query 518478 GAACACTTTGG-TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTG 518536 | | | | ||| |||| | | | ||||| | ||||||||||| || | ||||| Sbjct 1512 GCA-AGTGTGGATCATCCATACGACGTCCAATCATACGTTTTGCATCGAATACCGTATTT 1570 Query 518537 GTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTA 518596 | ||| |||| |||| | ||| || ||||| ||||| | | |||| || || | Sbjct 1571 TCCGCATTCCTTGCCACTTGCTCTTTAGCCGCATCGCCAATTAAACGTTCAGTATCGTTG 1630 Query 518597 AATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTA 518656 |||| ||||| || |||||||| || ||||| ||||| |||| ||||| | | | Sbjct 1631 AATGCCACATACGAAGGAGTTGTTTTGTTGCCTTGGTCATTTGCAACGATTTCCGCATGA 1690 Query 518657 CCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||||| | | | ||| ||||| ||| | ||||| || | ||||||||||| || Sbjct 1691 CCATTGCGATAGATACCAACACAGCTATAGGTTGTGCCGAGGTCAATACCAATCGC 1746 >seq12312 Length=1756 Score = 125 bits (138), Expect = 5e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 518530 AGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 518589 ||| ||| ||| || || || |||||| |||||| ||||||||||| ||| |||| || Sbjct 1270 AGTGTTGTGTGGGTTCATGGCCACTTGATTTTTGGCCGCATCTCCAATGAGACGTTCAGT 1211 Query 518590 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 || ||||| | ||||| ||||| || |||||||| ||||| ||||||||||| | || Sbjct 1210 ATCGGTAAAGGCCACATAGGATGGGGTGGTGCGATTGCCTTGGTCATTCGCAATCACCTC 1151 Query 518650 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 518706 || ||||||| | ||||| ||||| | |||| || || ||||||||||| Sbjct 1150 CACCTTACCATGCATAAACACACCAACACACGAATAAGTCGTACCCAAATCAATACC 1094 >seq1550 Length=11248 Score = 120 bits (132), Expect = 2e-21 Identities = 354/537 (66%), Gaps = 24/537 (4%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | || || |||| || || ||||||||||| || || || | | ||| Sbjct 7505 TTTTTGTCCAATCCGTAGGCAATTGCTGCCGCAGTTGGTTCGTTGATGATACGGAGTACA 7564 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| || || || |||||||| |||||||| | ||||| || | || || Sbjct 7565 TTCAGACCGGCGATCGCGCCCGCATCTTTGGTGGCTTGACGTTGTGCGTCCGTGAAGTAG 7624 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || ||||| | ||||||| | || || ||||| | || | || | || Sbjct 7625 GCGGGCACAGTGACGACGGCATTTTTGACCTCCTTACCCAGGTAGTCCTCGGCAATCTGC 7684 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404 ||||| |||| || | ||| | || || | ||| |||| | | | | ||| | Sbjct 7685 TTCATCTTACCCAACACCATGGCGGAGATCTCTTCCGGGGTGAA--GGTCG---TCACCT 7739 Query 518405 TGATATGATACTTCAAAATAT------GGTTTATTACCAACATTAATAACTTTAAATGGC 518458 | | | ||| || | | | |||||||| | || || | || |||||| Sbjct 7740 TCTTGCG-TACCTCGAGCTGTACGTACGGTTTATTGTCCTTGTTGATCAACTTGAATGGC 7798 Query 518459 CAGTATTTCATATCTGATTGAAC--ACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 || ||||||||| ||||| |||| || || || | | || | ||| |||| Sbjct 7799 CACACTTTCATATCCTCCTGAACGGACTTA--TCGTTGAATTTACGTCCCACTAAACGTT 7856 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTTGATATTTGGCTGCATCTCCA 518575 | ||||| || | ||||| ||||| || | ||| ||||| ||||| || ||||| Sbjct 7857 TCGCATCGAACACCGTATTCTCAGGATTGATCGTCAG-TTGATTCTTGGCCGCGTCTCCG 7915 Query 518576 ATCAGATGTTCT-----GTCT-CTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 |||| | | ||| |||| | || |||| ||||| ||||| || | ||||||||| Sbjct 7916 ATCAAACGCTCTCCCGTGTCTGCAGTGAATGCCACATAGGATGGGGTAATACGATTACCT 7975 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 518686 ||||| ||||| || || || || |||||| | ||||||| |||||||| ||| Sbjct 7976 TGATCGTTCGCGATTATCTCGACACGACCATTCTTGAATACACCCACACAACTGAAA 8032 >seq3162 Length=6033 Score = 113 bits (124), Expect = 3e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 518530 AGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 518589 ||| ||| ||| || || || |||||| |||||| ||||||||||| ||| |||| || Sbjct 1806 AGTGTTGTGTGGGTTCATGGCCACTTGATTTTTGGCCGCATCTCCAATGAGACGTTCAGT 1747 Query 518590 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 || ||||||| ||||| ||||| || |||||||| ||||| ||||||||||| | || Sbjct 1746 ATCAGTAAATGCCACATAGGATGGGGTGGTGCGATTGCCTTGGTCATTCGCAATCACCTC 1687 Query 518650 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 518706 || ||||| | | ||||| ||||| | | || || || || || ||||| Sbjct 1686 CACCTTACCGTGCATGAACACACCAACACACGAATACGTCGTGCCCAAGTCGATACC 1630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778737973535530