Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq16 152 1e-31 seq739 118 2e-21 >seq16 Length=240792 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| |||||||| |||||||| || || || |||| || || | || |||||| Sbjct 42335 ACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCG 42276 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| || || || ||||||||||| |||||||| |||||||| || Sbjct 42275 AGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGGAATGCCCTCTTTGTCCTGG 42216 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || ||||| || || ||||| ||||| |||||||| | |||||| Sbjct 42215 ATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCACCTCAAGGGTGATCGTCTTC 42156 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 42155 CCGGTTAGGGTCTTCACGAAGATCTGCAT 42127 Score = 129 bits (142), Expect = 1e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| || |||||||| |||||||| || ||||| ||||| ||||| || Sbjct 40586 CTAACCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTT 40527 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || || |||||| ||||| |||||||| | |||||| || || Sbjct 40526 GGCCTTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGT 40467 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | |||||| Sbjct 40466 CAGCGTTTTAACGAAAATTTGCAT 40443 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| || ||||| || |||||||| || || ||||||||||| ||||| Sbjct 40246 TACCAGCGAAGATCAGACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTGG 40187 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||||| |||||||||||| ||||| || || || | ||||| || || | Sbjct 40186 CTTTGACGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTAA 40127 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 40126 GTGTTTTCACGAAAATTTGCAT 40105 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| || |||||||| || || ||||| ||||||||||| || || ||| Sbjct 40935 TACCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTG 40876 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || || || ||||| ||||| || ||||| || || | |||||| || || | Sbjct 40875 CCTTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTA 40816 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||||| ||||| | |||||| Sbjct 40815 GGGTTTTGACGAAGATCTGCATT 40793 >seq739 Length=22138 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | |||||||||||||| || |||||||| || || |||||||| Sbjct 1442 CTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTT 1383 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || || || || ||||| ||||||||| || || | ||| || || || Sbjct 1382 TGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTTTGCCGGT 1323 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | ||||||| Sbjct 1322 CAGTGTCTTGACGAAAATTTGCATT 1298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108884489137835