Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6082 167 2e-35 seq1550 104 2e-16 >seq6082 Length=3378 Score = 167 bits (184), Expect = 2e-35 Identities = 403/603 (67%), Gaps = 14/603 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| || | || || || ||||| ||||||||| | | | |||||| | Sbjct 1747 AGCGATTGGTATTGACCTCGGCACAACCTATAGCTGTGTTGGTATCTATCGCAATGGTCA 1688 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 | ||||| |||| ||||| ||||| |||| ||| ||||| || ||||| | |||| Sbjct 1687 TGCGGAAATCGTTGCAAATGACCAAGGCAACAAAACAACTCCTTCGTATGTGGCATTCAA 1628 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||||| |||| |||| ||||| || ||| | |||| | | ||| | || Sbjct 1627 CGATACTGAACGTTTAATTGGCGATGCGGCTAAAGAGCAAGTGGCAAGGAATGCGGAAAA 1568 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG-ACTGTTCAGG 550229 ||| | || ||||| |||||| | |||||| | || | ||||| | ||| | ||| Sbjct 1567 TACGGTATTCGATGCAAAACGTATGATTGGACGTCGTATGGATGATCCACACT-TGCAGA 1509 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTT----AATGTTTCTGGAAAACCTTATATT 550285 |||||| ||||||| || ||| || | || | | | ||||| || Sbjct 1508 ACGATATGCGTAATTGGCCGTTT-AAAGTGATCTCAAAAGGTGCCAACAAACCGGCCATC 1450 Query 550286 GAAGCTAC--TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 || | || ||| |||| |||| || | || ||| | || || || ||| Sbjct 1449 GAGGTGACCTTCA--AAGGCGAACGTAAAGTGTTCTATCCGGAAGAGATCTCGTCAATGA 1392 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 || | | |||||||| |||||||| || | | | | || | || |||| || | Sbjct 1391 TTCTGCTAAAAATGAAGGAAACAGCCGAAGCGTATTTGGAACACAAGGTCTCGGAAGCCG 1332 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | ||||||||||| || ||||| || || |||| || || || || |||||||| | | Sbjct 1331 TCATAACTGTACCGGCCTATTTCAACGATGCACAGCGACAGGCCACAAAAGATGCAGCAA 1272 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||||| || || || || ||||||||||||||||| || || || || || || | Sbjct 1271 TAATTGCGGGTCTCAAACCACTACGTATTATCAATGAACCGACGGCCGCAGCTCTAGCGT 1212 Query 550524 ATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAG 550580 |||| || ||||| | ||| |||| |||||| | || || |||| |||| | Sbjct 1211 ATGGTCTCGATAAGAAGTTGGATGGTGAACGTAATGTGTTGATATTCGATTTGGGTGGTG 1152 Query 550581 GTA 550583 ||| Sbjct 1151 GTA 1149 >seq1550 Length=11248 Score = 104 bits (114), Expect = 2e-16 Identities = 345/533 (65%), Gaps = 28/533 (5%) Strand=Plus/Minus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 |||||||| ||||| | | |||||| || || || || || || ||||||||||| Sbjct 8028 AGTTGTGTGGGTGTATTCAAGAATGGTCGTGTCGAGATAATCGCGAACGATCAAGGTAAT 7969 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACGGAA---ACTGAACA---TTTAGTTGGTGAT 550135 | | ||| ||||| ||||| | ||||| | | || | | | ||| | || || Sbjct 7968 CGTATTACCCCATCCTATGTGGCATTCACTGCAGACACGGGAGAGCGTTTGATCGGAGAC 7909 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 || || || ||||| || |||||| ||||| | || ||||| ||||||||| Sbjct 7908 GCGGCCAAGAATCAACTGACGATCAATCCTGAGAATACGGTGTTCGATGCGAAACGTTTA 7849 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAA 550255 | ||| | | || || ||| | | ||||||| |||||||| ||||| ||| | Sbjct 7848 GTGGGACGTAAATTCAACGATAAGTCCGTTCAGGAGGATATGAAAGTGTGGCCATTCAA- 7790 Query 550256 ATTGTTAATGTTTCTGGA----AAACCTTATATTGA-----AGCTACTCATGAAGGATCT 550306 ||| || ||| ||||| || | | || ||| || ||||| | Sbjct 7789 ---GTTGATCAACAAGGACAATAAACCGTACGTACAGCTCGAGGTACGCAAGAAGG---T 7736 Query 550307 GTTAAACAATTTTCACCA--GAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAA 550364 | || | |||||| ||| | || || | ||||| || || ||||| || | Sbjct 7735 G----ACGACCTTCACCCCGGAAGAGATCTCCGCCATGGTGTTGGGTAAGATGAAGCAGA 7680 Query 550365 CAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATT 550424 ||| | | | ||| | || || | |||| || | ||||| || || || | Sbjct 7679 TTGCCGAGGACTACCTGGGTAAGGAGGTCAAAAATGCCGTCGTCACTGTGCCCGCCTACT 7620 Query 550425 TTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTC 550484 | | ||| ||||||||||||| || |||||||| || || || || || ||||| | Sbjct 7619 TCACGGACGCACAACGTCAAGCCACCAAAGATGCGGGCGCGATCGCCGGTCTGAATGTAC 7560 Query 550485 TTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 | ||||| ||||| ||||| ||||| || ||| |||| || ||| | || ||| Sbjct 7559 TCCGTATCATCAACGAACCAACTGCGGCAGCAATTGCCTACGGATTGGACAAA 7507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027074586157450