Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6082 208 5e-48 seq6064 109 4e-18 seq12312 107 1e-17 seq3162 96.9 2e-14 seq16 96.9 2e-14 seq739 91.5 1e-12 seq1178 86.0 4e-11 >seq6082 Length=3378 Score = 208 bits (230), Expect = 5e-48 Identities = 408/599 (68%), Gaps = 8/599 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||||||||| | || || || || || ||||| | | | | | |||||| | Sbjct 1746 GCGATTGGTATTGACCTCGGCACAACCTATAGCTGTGTTGGTATCTATCGCAATGGTCAT 1687 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 | ||||| |||| ||||||||||| || | |||||| || || ||||| | || | Sbjct 1686 GCGGAAATCGTTGCAAATGACCAAGGCAACAAAACAACTCCTTCGTATGTGGCATTCAAC 1627 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || ||||||| | | ||||| ||||| |||||| | |||| ||| ||| | | ||| Sbjct 1626 GATACTGAACGTTTAATTGGCGATGCGGCTAAAGAGCAAGTGGCAAGGAATGCGGAAAAT 1567 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATAC-CACTGTCCAATC 474567 || | || ||||| ||| | ||||||| ||| | | |||||| | |||| | || Sbjct 1566 ACGGTATTCGATGCAAAACGTATGATTGGACGTCGTATGGATGATCCACACT-TGCAGAA 1508 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGAT---AAATGTTGGTGGTAAACCATATATAGA 474624 ||||||||| ||||||| ||||| ||||| ||| | || ||||| || || Sbjct 1507 CGATATGCGTAATTGGCCGTTTAAAGTGATCTCAAAAGGTGCCAACAAACCGGCCATCGA 1448 Query 474625 AGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | | | ||| ||| |||| || | |||||| | || || |||||| || | Sbjct 1447 GGTGACCTTCAAAGGCGAACGTAAAGTGTTCTATCCGGAAGAGATCTCGTCAATGATTCT 1388 Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||||||| |||| || | ||| | | ||| | || | || || || || Sbjct 1387 GCTAAAAATGAAGGAAACAGCCGAAGCGTATTTGGAACACAAGGTCTCGGAAGCCGTCAT 1328 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||||| || || ||||| || ||| | || || || || || |||||||| | || ||| Sbjct 1327 AACTGTACCGGCCTATTTCAACGATGCACAGCGACAGGCCACAAAAGATGCAGCAATAAT 1268 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| || |||||||||| |||||||| || || || || || || ||||| Sbjct 1267 TGCGGGTCTCAAACCACTACGTATTATCAATGAACCGACGGCCGCAGCTCTAGCGTATGG 1208 Query 474865 TCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GTGGAGGTA 474920 ||| |||||||| | || ||| ||||| || || || |||| |||| |||| Sbjct 1207 TCTCGATAAGAAGTTGGATGGTGAACGTAATGTGTTGATATTCGATTTGGGTGGTGGTA 1149 >seq6064 Length=3385 Score = 109 bits (120), Expect = 4e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| || ||||| || ||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 167 CTTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTT 226 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||||||| ||| || ||||| | || | || |||||||| || || ||||| | Sbjct 227 GGCTTTGACATTTTCGATGGTATCGGATGACTCAA-CCTCAAGGGTTATCGTCTTACCCG 285 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | || ||||| ||||| || || Sbjct 286 TTAGGGTCTTGACGAAGATCTG 307 >seq12312 Length=1756 Score = 107 bits (118), Expect = 1e-17 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 ||||||||||| || || ||||| ||||| | ||| | ||||||| || || Sbjct 1094 GGTATTGATTTGGGTACGACTTATTCGTGTGTTGGTGTGTTTATGCATGGTAAGGTGGAG 1153 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 | ||||| ||||||||||| ||| | || || ||||| ||||| | ||||| || ||| Sbjct 1154 GTGATTGCGAATGACCAAGGCAATCGCACCACCCCATCCTATGTGGCCTTTACCGATACT 1213 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 |||| ||| ||||||||||| || ||| |||||| Sbjct 1214 GAACGTCTCATTGGAGATGCGGCCAAAAATCAAG 1247 >seq3162 Length=6033 Score = 96.9 bits (106), Expect = 2e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 ||||| || || | ||||| ||||||||||| ||| | || || ||||| ||||| | Sbjct 1678 GGTAAGGTGGAGGTGATTGCGAATGACCAAGGCAATCGCACCACCCCATCCTATGTGGCA 1737 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 |||||||| ||||||| ||| ||||||||||| || ||| |||||| Sbjct 1738 TTTACTGATACTGAACGTCTCATTGGAGATGCGGCCAAAAATCAAG 1783 >seq16 Length=240792 Score = 96.9 bits (106), Expect = 2e-14 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 || |||||| |||| ||||| || || |||||||| ||||| || || ||||| || || Sbjct 41302 ATGTTCAAGA-GCTTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTT 41244 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAA 480735 ||| ||||||||| ||| ||| || || ||||| | | | || | | ||||| | Sbjct 41243 GTCCTGAATCTTTGCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCT-CGAGGGTGA 41185 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||||||||| |||||||| || ||||| Sbjct 41184 TCGTCTTACCGGTGAGCGTCTTAACAAATATTTG 41151 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||| || || |||||||||||||| ||||| |||||||||||||| |||||||| Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCC 40523 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 ||||| || || ||||| | | | | |||||||| || || || || || || Sbjct 40522 TTGACGTTCTCGATCGTATCCGAAGCCTCCA-CCTCAAGGGTGATCGTCTTGCCAGTCAG 40464 Query 480752 AGTCTTAACGAAAATTTG 480769 || |||||||||||||| Sbjct 40463 CGTTTTAACGAAAATTTG 40446 Score = 86.0 bits (94), Expect = 4e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||| | || ||||| || || ||||| ||||| || ||||| |||||||||||||| ||| Sbjct 41637 TGCGTACCCGCAAAGATGAGTCGTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATC 41578 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| || || || || | || | | |||||||| || || ||||| Sbjct 41577 TTGGCTTTCACATTCTCGATCGTGTCGGATGCTTCCA-CCTCAAGGGTGATCGTCTTACC 41519 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||||||||| || || Sbjct 41518 GGTAAGCGTCTTAACGAAGATCTG 41495 Score = 86.0 bits (94), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || |||||||| |||||||| |||||||| || ||||| || ||||||||||| ||||| Sbjct 41956 TTACCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATACCCTCCTTGTCTTGGATCTTC 41897 Query 480690 TGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTG 480749 || ||| || || ||||| | | ||||| || || |||||||| ||| Sbjct 41896 GCCTTCACATTCTCGATCGTATCCGACGCTTCCACCTCAAGCGTTATGGTTTTACCCGTG 41837 Query 480750 AGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| Sbjct 41836 AGCGTTTTGACGAATATTTG 41817 >seq739 Length=22138 Score = 91.5 bits (100), Expect = 1e-12 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 |||| ||| ||||| || || | ||||||||| || || || || |||||||| || ||| Sbjct 1447 AGTTACTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCTGA 1388 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTT 480742 || ||| |||||| ||| || ||||| | || | | || | || || || ||||| Sbjct 1387 ATTTTTGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTT-CTAGTGTGATCGTTTT 1329 Query 480743 ACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||| ||||||||||| Sbjct 1328 GCCGGTCAGTGTCTTGACGAAAATTTG 1302 >seq1178 Length=14540 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 321759 GTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTC 321818 |||||||| || |||||| | ||| | |||||| || |||| ||| ||| || Sbjct 5523 GTAACAATCTCCGGAAATGTCATATTCTGTGCAATCGTTCTCGGTACACCGACTGTATCA 5464 Query 321819 AGTGCAATATTTGGATCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACCC 321878 | || | ||| || |||| |||||| || || ||| | || | ||| || ||||||||| Sbjct 5463 ATTGGCAAATTCGGGTCAGGTGTGATCACAGTTCGAGCGGAGAAATCCACTCGTTTACCC 5404 Query 321879 ATAAGATTTCCTCTAATACGACCTTCTTTTCC 321910 || | ||| |||| || ||||||||||| || Sbjct 5403 ATCAAATTACCTCGGATCCGACCTTCTTTCCC 5372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266377401741740