Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6064 114 2e-20 seq16 91.5 3e-13 seq372 87.8 3e-12 >seq6064 Length=3385 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || |||||||| || | | |||||||||||||| || || || |||||||| || ||| Sbjct 168 TTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTTG 227 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||| | |||| || |||||||| |||||||| || || ||||| || ||||| ||| Sbjct 228 GCTTTGACATTTTCGATGGTATCGGATGACTCAACCTCAAGGGTTATCGTCTTACCCGTT 287 Query 193338 AGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || |||||||| Sbjct 288 AGGGTCTTGACGAAGATCTGCATTTT 313 >seq16 Length=240792 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || ||||||||||| || || || || | || | |||| || ||| Sbjct 40915 TGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCCTTCACATTTTCGATGGTA 40856 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||||||| ||||| || || ||||| ||||| ||||| || || || ||| Sbjct 40855 TCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAGGGTTTTGACGAAGATCTGC 40796 Query 193359 ATT 193361 ||| Sbjct 40795 ATT 40793 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || ||||| ||||| || || || || | ||| | ||| || ||| Sbjct 41269 TGCTGATCGGGTGGGATTCCCTCTTTGTCCTGAATCTTTGCTTTCACATTCTCGATGGTA 41210 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| |||||| || || || || || ||||| || ||||| || |||||||||||| Sbjct 41209 TCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGTGAGCGTCTTAACAAATATTTGC 41150 Query 193359 ATT 193361 ||| Sbjct 41149 ATT 41147 >seq372 Length=41489 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 22496 TGGACTATCTAAAGGATTGCACGGATTTCATGTGCATGAATATGGCGATTTGAGCAACGG 22555 |||| ||||| || |||||||||||||| || ||| ||||||| ||| | ||||| Sbjct 28007 TGGATTATCTCCCGGTTTGCACGGATTTCACGTTCATCAATATGGTGATACCACAAACGG 27948 Query 22556 ATGTACATCAGCTGGAGAGCATTTTAATCCATTTAATAAAA 22596 ||||| ||| |||||| |||||||||||||| || |||| Sbjct 27947 ATGTATATCTGCTGGACCTCATTTTAATCCATTCAACAAAA 27907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899182025211600