Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq16 89.7 9e-13 >seq16 Length=240792 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||||||| || | | |||||| || ||||| || || || || ||||| || || Sbjct 41957 TTTACCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATACCCTCCTTGTCTTGGATCTT 41898 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 || ||||| || ||||| |||| ||| || || || || ||||||||||| || Sbjct 41897 CGCCTTCACATTCTCGATCGTATCCGACGCTTCCACCTCAAGCGTTATGGTTTTACCCGT 41838 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 | ||||| | |||||| ||||| Sbjct 41837 GAGCGTTTTGACGAATATTTGCAT 41814 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||| || || | | ||||| || ||||| ||||||||||| || || || || Sbjct 40935 TACCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTG 40876 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || ||||| || ||||| |||| || ||||| ||||| || || ||||| |||| Sbjct 40875 CCTTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTA 40816 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| ||||||||| Sbjct 40815 GGGTTTTGACGAAGATCTGCATT 40793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904660747029000