Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq16 109 5e-19 seq6064 91.5 1e-13 seq739 84.2 2e-11 >seq16 Length=240792 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| ||||| || || || || ||||| || || | Sbjct 40794 ATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATCACTCTGGAAGTTGAGGCGTCG 40853 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||| |||||||||||||| || ||||||||| Sbjct 40854 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAAGGAATTCCACCCGATCAA 40913 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | ||||| || || Sbjct 40914 CAACGTCTCATCTTCGCTGG 40933 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| ||||| |||||||| || || || || || || ||||| || Sbjct 41492 ATGCAGATCTTCGTTAAGACGCTTACCGGTAAGACGATCACCCTTGAGGTGGAAGCATCC 41551 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| ||||| || || || ||||| Sbjct 41552 GACACGATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAG 41611 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 41612 CAACGACTCATCTTTGCGGG 41631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||||||| || || || || || || || || || | Sbjct 42127 ATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTCG 42186 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || || ||||| |||||||| || || || || || ||| Sbjct 42187 GATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCAA 42246 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| ||||| || || || | | | | || || |||||| Sbjct 42247 CAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAAC 42306 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| ||||| || || ||| | ||| | || | || |||||| Sbjct 42307 ATCCAAAAAGAATCCACTCTCCACCTTGTGCTCCGTCTCCGTGGAGGC 42354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || || ||||| || ||||| || || || | Sbjct 40105 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACTATCACACTCGAGGTGGAGGCTTCG 40164 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| |||||||||||||| || || ||||| ||||| Sbjct 40165 GACACCATCGAGAACGTCAAAGCCAAA-ATCCAAGACAAAGAGGGTATCCCTCCAGATCA 40223 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 |||||| ||||||| || || Sbjct 40224 GCAACGTCTGATCTTCGCTGG 40244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | |||||||| || |||||||| || ||||| || || ||||| | Sbjct 41814 ATGCAAATATTCGTCAAAACGCTCACGGGTAAAACCATAACGCTTGAGGTGGAAGCGTCG 41873 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || || || |||||| Sbjct 41874 GATACGATCGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATTCCACCAGATCAA 41933 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 || ||| | |||||||| || ||| Sbjct 41934 CAGCGTCTTATCTTTGCTGGTAAA 41957 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||||||||| || || || || || || || || || || || | Sbjct 40443 ATGCAAATTTTCGTTAAAACGCTGACTGGCAAGACGATCACCCTTGAGGTGGAGGCTTCG 40502 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| |||||||| ||||| |||||| Sbjct 40503 GATACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCAGATCAA 40562 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| ||||||| || || Sbjct 40563 CAACGTCTGATCTTCGCTGG 40582 >seq6064 Length=3385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| ||||| || || || || || || || | || Sbjct 310 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATAACCCTTGAGGTTGAGTCATCC 251 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| ||||| || || || || ||||| |||||| Sbjct 250 GATACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATTCCTCCTGATCAA 191 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| |||| |||||||| || Sbjct 190 CAACGTCTGATATTTGCCGGTAA 168 >seq739 Length=22138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || | || || || ||||| ||||| || || || ||||| ||||| Sbjct 1296 ACAATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCA 1355 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | |||| || || ||| || || || || ||||| || || || || Sbjct 1356 TCGGATACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGAC 1415 Query 24821 CAACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||||||||| || || || Sbjct 1416 CAACAACGTTTGATCTTCGCTGGTAA 1441 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || ||||| ||||| || ||| | || || ||||| | Sbjct 1640 ATGCAAATTTTTGTCAAGACACTGACCGGCAAAACGATCACGTTGGAGGTCGAAGCGTCA 1699 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | ||||| ||||| || || ||||| || || || || || ||| Sbjct 1700 GATACAATCGAGAATGTAAAGGCGAAGATTCAGGATAAAGAGGGCATCCCACCAGACCAA 1759 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| ||||||||||| || || Sbjct 1760 CAACGGTTGATCTTTGCTGGTAA 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449661375641400