Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2116 136 6e-26 seq747 116 6e-20 >seq2116 Length=8653 Score = 136 bits (150), Expect = 6e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || || |||||| |||| ||||| ||| | | Sbjct 5176 TGTACTTGGTGACGGCCTTGGTGCCTTCCGATACAGCGTGCTTGGCGAGTTCTCCGGGGA 5117 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || |||| ||||| | ||||| | ||| || ||||||||| | Sbjct 5116 GGATCAATCGGACGGACGTCTGCACTTCGCGAGATGAGATGGTCGAGCGCTTGTTGTAGT 5057 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| |||| || |||| | |||| || |||| | |||||||| |||||||||| Sbjct 5056 GGGCCAGACGGCTTGCTTCGGCGGCGATACGTTCGAAGACATCGTTGACGAACGAGTTCA 4997 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | | ||||| || ||| || ||||| ||||| | ||| Sbjct 4996 TGATGGACATGGCTCGTGACGAGATTCCGGTGTCTGGATGCACTTGCTTCAACAC 4942 >seq747 Length=21950 Score = 116 bits (128), Expect = 6e-20 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| || || ||||||||||| || || | |||| ||| ||| | | Sbjct 1291 TGTACTTGGTGACGGCTTTTGTGCCCTCTGAGACAGCATGTTTTGCCAATTCACCGGGGA 1350 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || |||| |||||||| ||||| | ||||| |||||||| | Sbjct 1351 GAATAAGTCGAACGGAGGTCTGGACTTCGCGAGACGAAATCGTTGATCGCTTGTTGTAGT 1410 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | || |||| |||| || || | | |||||| || ||||| |||| Sbjct 1411 GAGCCAGACGACTTGCTTCGGCTGCGATACGCTCAAAGACGTCGTTCACGAACGAATTCA 1470 Query 1485650 TGATCGACATCG-ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | | | ||||| || ||||| || || ||||| ||||| Sbjct 1471 TGATCGACATCGCACGAGAT-GAGATTCCGGTATCGGGATGAACTTGCTTCAGCAC 1525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911778136565195