Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6082 320 1e-81 seq12312 122 7e-22 seq1550 111 1e-18 seq3162 107 1e-17 >seq6082 Length=3378 Score = 320 bits (354), Expect = 1e-81 Identities = 987/1496 (66%), Gaps = 48/1496 (3%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 |||||||| || |||||| | || | ||| |||||||| || ||||| || |||||||| Sbjct 272 GTTGATTTGTCTGCGGCACTAACGTGAAGTATACCATTAGCGTCCAAGTCGAATGTGACC 331 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 |||||||| ||||| || | | || ||||| || | || || |||||| Sbjct 332 TCAATTTGTGGGACACCACGTGGCGCTGGTGGAATTTGAGTGAGATCGAAACGTCCCAGC 391 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 | || || ||||| || | ||||| || ||| | | ||| ||| | || | | | Sbjct 392 TGGTTGTTGTCTTTGGTAAGGGCACGTTCTCCTTCGTACACTTGAATACTGACAGCTGGT 451 Query 281591 TGATTATCTGAATAAGTTGTAAA---TACTCTGGATTTTTTACAAGGAATTGTTGTGTTT 281647 |||||||| || || || || || | | || ||||| | || ||| || || Sbjct 452 TGATTATCAGAGTACGTGGTGAAGGTTTGTGTGCATTTTGTC---GGTATTCGGGTATTG 508 Query 281648 C-TATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706 | | ||| || ||| |||||| ||| || || ||||| | || | || ||||| Sbjct 509 CGTTTCACTAGCGTTG-TCATAACACCGCCTGCCGTTTCAATGCCCAACGACAGAGGCTG 567 Query 281707 GACATCAACTAGGACAATAT-TTTGA---AGTTTTTCATCAGTTTGACCAACAAGAATAG 281762 || || || || | || | ||||| |||| | | | | | || || |||| Sbjct 568 AACGTCCACCAGCAAAACGTCTTTGACACAGTTGT-CTTGAACT---CCGCTCAGGATAG 623 Query 281763 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 281822 | ||||| | || ||||| |||||||| ||||| |||||||| | | | ||| |||| Sbjct 624 CGGCTTGGACTGCGGCACCGTATGCAACCGCTTCGTCAGGATTTATCGATAGATTCAGTT 683 Query 281823 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTC 281882 ||| ||| ||| |||| | || |||| | || || ||||| |||| || || | Sbjct 684 GTTTGCCACCGAAGAAATCCGTCAGTAGTTTTTGCACTTTTGGAATTCGAGTCGAGCCAC 743 Query 281883 CAACTAATACAATTTCATGCACCTG--TGATTTATCCAGTTTTGAATCCAATAAAACTTT 281940 | || | ||||| ||| | ||| || || ||| |||| | || ||| |||| Sbjct 744 CGACCAGTACAACTTCGTTCAC-TGAATG-TTTGTCCATACGGGCGTCGCGTAACGCTTT 801 Query 281941 TTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCT 282000 || || || ||||| | ||||| ||||| ||||||||||||||| ||| | Sbjct 802 CTCGACTGGCGCAAGAGTTTTTTGGAACAAATCTGAGCAAAGTTCTTCGAATCGAGCACG 861 Query 282001 AGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTT 282059 || | | |||| | || || | ||||| || | ||||||||| || | | || Sbjct 862 TGTTATAC-GACAGTTGAAGTCCAAACCTTCATGCAGACTATCAACTTCGATAATGGCTT 920 Query 282060 GAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG 282119 |||| || || || | ||||| ||||||||||| || || | || | || | | Sbjct 921 GAGTGGAGCTTGACAGGGTTCGTTTGGCACGTTCACACGCCGTACGAAGACGTCTCAGTG 980 Query 282120 CTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTC--TTGAAATCTTCAACACACCA 282177 | || ||| || || | ||| || || | ||||| | ||| | ||| | Sbjct 981 CACGAGCG--TTGTGTCTGATGTCTTTACGATGCTCACGTTTGAACTGTTCTAAACAATA 1038 Query 282178 TGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCT 282237 | || | ||||| || ||||||||||| ||||| | |||| || | || | | | Sbjct 1039 GTTCACCAAACGATCGTCGAAATCTTCACCACCCAAATGTGTATCACCGGCTGTTGATTT 1098 Query 282238 TACTTGGAAAAGTCCATCTTCAAGAGA----CAAAAGAGTAACATCATGGGTTCCACCAC 282293 |||| ||| ||| |||| |||| ||||| | ||||| || ||||||| Sbjct 1099 CACTTCGAACAGTGAGCCTTCT-GAGATGCTCAAAATGGACACATCGAATGTACCACCAC 1157 Query 282294 CCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAA 282353 ||| ||| || || | ||||| ||| || || ||||| ||||||||||| | Sbjct 1158 CCAAATCGAATATCAACACATTACGTTCACCATCCAACTTCTTATCGAGACCATACGCTA 1217 Query 282354 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 282413 ||| || || || |||||||| ||||| | | || ||||| |||||| || ||| Sbjct 1218 GAGCTGCGGCCGTCGGTTCATTGATAATACGTAGTGGTTTGAGACCCGCAATTATTGCTG 1277 Query 282414 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||||||| ||||| |||| |||| |||||| ||||| || || ||||| || ||||| | Sbjct 1278 CATCTTTTGTGGCCTGTCGCTGTGCATCGTTGAAATAGGCCGGTACAGTTATGACGGCTT 1337 Query 282474 CTGTTA-CTTCTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAAAATCA 282530 | | | ||| | |||||| ||| ||||| ||||||| |||||||| | ||||| Sbjct 1338 CCGAGACCTTGTGTTCCAA-ATA--CGCTTCGGCTGTTTCCTTCATTTTTAGCAGAATCA 1394 Query 282531 TTGATGAAATTTGTTCTGG--AGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAA 282587 |||| || || | ||| || |||| | | || ||| ||||| | | || || | Sbjct 1395 TTGACGAGATCTCTTCCGGATAGAACACT--TTACGTTCGCCTTTGA-AGGTCACCTCGA 1451 Query 282588 AATATGGTTTATTACCAACATT---AATAACTTTAAATGGCCAATATTTCATATCTGATT 282644 ||||| || || | || || |||||||| ||||||| |||||| | Sbjct 1452 TGGCCGGTTTGTTGGCACCTTTTGAGATCACTTTAAACGGCCAATTACGCATATCGTTCT 1511 Query 282645 GAACACTTTGG-TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTG 282703 | | | | ||| |||| | | | ||||| | ||||||||||| || | ||||| Sbjct 1512 GCA-AGTGTGGATCATCCATACGACGTCCAATCATACGTTTTGCATCGAATACCGTATTT 1570 Query 282704 GTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTA 282763 | ||| ||| |||| | ||| || ||||| ||||| | | |||| || || | Sbjct 1571 TCCGCATTCCTTGCCACTTGCTCTTTAGCCGCATCGCCAATTAAACGTTCAGTATCGTTG 1630 Query 282764 AATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTA 282823 |||| ||||| || |||||||| || ||||| ||||| |||| ||||| | | | Sbjct 1631 AATGCCACATACGAAGGAGTTGTTTTGTTGCCTTGGTCATTTGCAACGATTTCCGCATGA 1690 Query 282824 CCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||||| | | | ||| ||||| ||| | ||||| || | ||||||||||| || Sbjct 1691 CCATTGCGATAGATACCAACACAGCTATAGGTTGTGCCGAGGTCAATACCAATCGC 1746 >seq12312 Length=1756 Score = 122 bits (134), Expect = 7e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 282697 AGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 282756 ||| ||| ||| || | || |||||| |||||| ||||||||||| ||| |||| || Sbjct 1270 AGTGTTGTGTGGGTTCATGGCCACTTGATTTTTGGCCGCATCTCCAATGAGACGTTCAGT 1211 Query 282757 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816 || ||||| | ||||| ||||| || |||||||| ||||| ||||||||||| | || Sbjct 1210 ATCGGTAAAGGCCACATAGGATGGGGTGGTGCGATTGCCTTGGTCATTCGCAATCACCTC 1151 Query 282817 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 || ||||||| | ||||| ||||| | |||| || || ||||||||||| Sbjct 1150 CACCTTACCATGCATAAACACACCAACACACGAATAAGTCGTACCCAAATCAATACC 1094 >seq1550 Length=11248 Score = 111 bits (122), Expect = 1e-18 Identities = 352/537 (66%), Gaps = 24/537 (4%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | || || |||| || || ||||||||||| || || || | | ||| Sbjct 7505 TTTTTGTCCAATCCGTAGGCAATTGCTGCCGCAGTTGGTTCGTTGATGATACGGAGTACA 7564 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| || || || |||||||| |||||||| | ||||| || | || || Sbjct 7565 TTCAGACCGGCGATCGCGCCCGCATCTTTGGTGGCTTGACGTTGTGCGTCCGTGAAGTAG 7624 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || ||||| | ||||||| | | || || || || | || | || | || Sbjct 7625 GCGGGCACAGTGACGACGGCATTTTTGACCTCCTTACCCAGGTAGTCCTCGGCAATCTGC 7684 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||| |||| || | ||| | || || | ||| || | | | | | ||| | Sbjct 7685 TTCATCTTACCCAACACCATGGCGGAGATCTCTTCCGGGGTGAA--GGTCG---TCACCT 7739 Query 282572 TGATATGATACTTCAAAATAT------GGTTTATTACCAACATTAATAACTTTAAATGGC 282625 | | | ||| || | | | |||||||| | || || | || |||||| Sbjct 7740 TCTTGCG-TACCTCGAGCTGTACGTACGGTTTATTGTCCTTGTTGATCAACTTGAATGGC 7798 Query 282626 CAATATTTCATATCTGATTGAAC--ACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 282683 || ||||||||| ||||| |||| || || || | | || | ||| |||| Sbjct 7799 CACACTTTCATATCCTCCTGAACGGACTTA--TCGTTGAATTTACGTCCCACTAAACGTT 7856 Query 282684 TTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCA 282742 | ||||| || | ||||| ||||| | | ||| ||||| ||||| || ||||| Sbjct 7857 TCGCATCGAACACCGTATTCTCAGGATTGATCGTCAG-TTGATTCTTGGCCGCGTCTCCG 7915 Query 282743 ATCAGATGTTCT-----GTCT-CTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 |||| | | ||| |||| | || |||| ||||| ||||| || | ||||||||| Sbjct 7916 ATCAAACGCTCTCCCGTGTCTGCAGTGAATGCCACATAGGATGGGGTAATACGATTACCT 7975 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853 ||||| ||||| || || || || |||||| | ||||||| |||||||| ||| Sbjct 7976 TGATCGTTCGCGATTATCTCGACACGACCATTCTTGAATACACCCACACAACTGAAA 8032 >seq3162 Length=6033 Score = 107 bits (118), Expect = 1e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 282697 AGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 282756 ||| ||| ||| || | || |||||| |||||| ||||||||||| ||| |||| || Sbjct 1806 AGTGTTGTGTGGGTTCATGGCCACTTGATTTTTGGCCGCATCTCCAATGAGACGTTCAGT 1747 Query 282757 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816 || ||||||| ||||| ||||| || |||||||| ||||| ||||||||||| | || Sbjct 1746 ATCAGTAAATGCCACATAGGATGGGGTGGTGCGATTGCCTTGGTCATTCGCAATCACCTC 1687 Query 282817 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 || ||||| | | ||||| ||||| | | || || || || || ||||| Sbjct 1686 CACCTTACCGTGCATGAACACACCAACACACGAATACGTCGTGCCCAAGTCGATACC 1630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738568132013130