Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6064 114 3e-20 seq739 113 9e-20 seq16 113 9e-20 seq16536 84.2 4e-11 >seq6064 Length=3385 Score = 114 bits (126), Expect = 3e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || || | ||||||||| ||||| || || ||||||||||||||||| Sbjct 168 TTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTTG 227 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| |||||||| || ||||| | || || || | ||||||||||| || || Sbjct 228 GCTTTGACATTTTCGATGGTATCGGATGACTCAACCTCAAGGGTTATCGTCTTACCCGTT 287 Query 82788 AACGTCTTTACAAATATCTGCATTATTA 82815 | ||||| || || ||||||||| ||| Sbjct 288 AGGGTCTTGACGAAGATCTGCATTTTTA 315 >seq739 Length=22138 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 82660 CTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTT 82719 |||||| || ||||| ||||| | | |||||| ||||| || || ||||||||||| | Sbjct 1449 CTAGTTACTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCT 1390 Query 82720 GAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCT 82779 |||| ||||| || |||||||| || ||||| | ||| ||||| | || ||||| | Sbjct 1389 GAATTTTTGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTT 1330 Query 82780 TGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| |||| ||||| || || || |||||| || Sbjct 1329 TGCCGGTCAGTGTCTTGACGAAAATTTGCATTGTT 1295 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | |||||| ||||| || || || || ||||| |||||||| Sbjct 1782 TTACCAGCAAAGATCAACCGTTGTTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTC 1723 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||| || || ||||| | ||| || ||||| || ||||| ||||| ||| Sbjct 1722 GCCTTTACATTCTCGATTGTATCTGACGCTTCGACCTCCAACGTGATCGTTTTGCCGGTC 1663 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| || ||||| Sbjct 1662 AGTGTCTTGACAAAAATTTGCAT 1640 >seq16 Length=240792 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || | ||||||||||||||| ||||||||||| || |||||||| || Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCC 40523 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || |||||||| || || || || | || ||||||||||| |||| | Sbjct 40522 TTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTCAGC 40463 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 40462 GTTTTAACGAAAATTTGCAT 40443 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || | ||| ||||| || || ||||| || || || ||||||||| Sbjct 41290 TTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCCTGAATCTTT 41231 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || || ||||| || || || || | || |||||||| || || Sbjct 41230 GCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGTG 41171 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | |||||| |||||||| |||||| Sbjct 41170 AGCGTCTTAACAAATATTTGCATT 41147 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| ||||||||||| || | ||||||||||| || || || ||||| ||||| ||||| Sbjct 41957 TTTACCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATACCCTCCTTGTCTTGGATCTT 41898 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || |||||||| | ||| || || | ||||| || || || || Sbjct 41897 CGCCTTCACATTCTCGATCGTATCCGACGCTTCCACCTCAAGCGTTATGGTTTTACCCGT 41838 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||| || || ||||| ||||| Sbjct 41837 GAGCGTTTTGACGAATATTTGCAT 41814 >seq16536 Length=1336 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||||||||| || || || |||||||| |||||||| ||||| || || | Sbjct 437 TACCACCTCTCAAACGCAGCACCAAATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTG 378 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 | | | ||||||| || || | |||||| || Sbjct 377 ACAAAGTTCTACCATCCTCCAATTGTTTGCC 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981298791339695