Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2116 111 2e-18 seq747 95.1 2e-13 >seq2116 Length=8653 Score = 111 bits (122), Expect = 2e-18 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||||| |||||||||||||| |||||||| | |||| || |||| | |||| || Sbjct 4985 CCATGTCCATCATGAACTCGTTCGTCAACGATGTCTTCGAACGTATCGCCGCCGAAGCAA 5044 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 | || ||||| | || |||||||||| || ||| | ||||| | ||||| ||| Sbjct 5045 GCCGTCTGGCCCACTACAACAAGCGCTCGACCATCTCATCTCGCGAAGTGCAGACGTCCG 5104 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||||| | | ||| ||||| |||| |||||| || || || ||||||| Sbjct 5105 TCCGATTGATCCTCCCCGGAGAACTCGCCAAGCACGCTGTATCGGAAGGCACCA 5158 >seq747 Length=21950 Score = 95.1 bits (104), Expect = 2e-13 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||| ||||| || |||||| | | || || |||| |||| || || Sbjct 1480 ATGTCGATCATGAATTCGTTCGTGAACGACGTCTTTGAGCGTATCGCAGCCGAAGCAAGT 1421 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||||||||| ||||| | ||||| |||||||| |||| Sbjct 1420 CGTCTGGCTCACTACAACAAGCGATCAACGATTTCGTCTCGCGAAGTCCAGACCTCCGTT 1361 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | | ||| ||| |||| | || || ||||| |||||||| Sbjct 1360 CGACTTATTCTCCCCGGTGAATTGGCAAAACATGCTGTCTCAGAGGGCAC 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173759740544810