Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16 185 1e-41 seq6064 127 2e-24 seq739 113 5e-20 >seq16 Length=240792 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| ||||| || || |||||||| ||| | Sbjct 42127 ATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTCG 42186 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 42187 GATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCAA 42246 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || || |||||||| || | ||| ||||| | |||||||| Sbjct 42247 CAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAAC 42306 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||||||||| || || || | ||||| || || || Sbjct 42307 ATCCAAAAAGAATCCACTCTCCACCTTGTGCTCCGTCTCCGTGGAGG 42353 Score = 129 bits (142), Expect = 7e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| ||||| ||||| || || || ||||||||| | Sbjct 41147 AATGCAAATATTTGTTAAGACGCTCACCGGTAAGACGATCACCCTCGAGGTTGAGGCTTC 41206 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| |||| || || ||||||||||| |||||||| || || || || Sbjct 41207 CGATACCATCGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGAATCCCACCCGATCA 41266 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 ||| ||||| || || |||||||||| Sbjct 41267 GCAACGTCTGATCTTCGCTGGTAAGC 41292 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| ||||| || || || || || || |||||||| || | Sbjct 41814 ATGCAAATATTCGTCAAAACGCTCACGGGTAAAACCATAACGCTTGAGGTGGAAGCGTCG 41873 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || || ||||||||||| ||||| ||||| || Sbjct 41874 GATACGATCGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATTCCACCAGATCAA 41933 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 |||||||| || ||||||||||| Sbjct 41934 CAGCGTCTTATCTTTGCTGGTAA 41956 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || ||||| || |||||||| || || |||||||| ||| | Sbjct 40443 ATGCAAATTTTCGTTAAAACGCTGACTGGCAAGACGATCACCCTTGAGGTGGAGGCTTCG 40502 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||||| || |||||||||||||| ||||| |||||||| || Sbjct 40503 GATACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCAGATCAA 40562 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || || |||||| || Sbjct 40563 CAACGTCTGATCTTCGCTGGTTAG 40586 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||||||||| ||||| || || |||||||| || || Sbjct 41492 ATGCAGATCTTCGTTAAGACGCTTACCGGTAAGACGATCACCCTTGAGGTGGAAGCATCC 41551 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| || || || || |||||||| || ||||| || || ||| Sbjct 41552 GACACGATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAG 41611 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 || || || || ||||| |||| ||| Sbjct 41612 CAACGACTCATCTTTGCGGGTACGCA 41637 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || ||||| ||||||||||| || || ||||| ||| | Sbjct 40105 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACTATCACACTCGAGGTGGAGGCTTCG 40164 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || || ||||| || ||||| ||||| || |||||||| ||| Sbjct 40165 GACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 40224 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || ||||| || || ||||||| Sbjct 40225 CAACGTCTGATCTTCGCTGGTA 40246 >seq6064 Length=3385 Score = 127 bits (140), Expect = 2e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || ||||| || || ||||||||||||||| Sbjct 311 AATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATAACCCTTGAGGTTGAGTCATC 252 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | || || || ||||| || |||||||| |||||||| || || Sbjct 251 CGATACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATTCCTCCTGATCA 192 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || ||||| |||||| Sbjct 191 ACAACGTCTGATATTTGCCGGTAAG 167 >seq739 Length=22138 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| || |||||||| || || || || || || || || Sbjct 1298 AATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCATC 1357 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| | ||||| ||||||||||| ||||| || || || |||||||| Sbjct 1358 GGATACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGACCA 1417 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || ||| | || || ||||||||| |||| Sbjct 1418 ACAACGTTTGATCTTCGCTGGTAAGTAACT 1447 Score = 100 bits (110), Expect = 3e-16 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| ||||||||||| || |||||||| || || || | ||||| || |||| Sbjct 1640 ATGCAAATTTTTGTCAAGACACTGACCGGCAAAACGATCACGTTGGAGGTCGAAGCGTCA 1699 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| || | ||| | ||||| || |||||||| || ||||| || || |||||| Sbjct 1700 ---GATACAATCGAGAATGTAAAGGCGAAGATTCAGGATAAAGAGGGCATCCCACCAGAC 1756 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || | || |||||||||||| Sbjct 1757 CAACAACGGTTGATCTTTGCTGGTAAG 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570010951395600