Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq16 136 3e-27 seq739 91.5 1e-13 >seq16 Length=240792 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| ||| | || || ||||| ||||| |||| Sbjct 42126 CATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTC 42185 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| |||| || || ||||| || |||||||| ||||| ||||| || || Sbjct 42186 GGATACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCA 42245 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | ||||||||||||| | |||||| || ||| | ||||| || || Sbjct 42246 ACAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAA 42305 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| ||||| || || || Sbjct 42306 CATCCAAAAAGAATCCAC 42323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || || ||||| ||| | || || || || || || | ||| Sbjct 41148 ATGCAAATATTTGTTAAGACGCTCACCGGTAAGACGATCACCCTCGAGGTTGAGGCTTCC 41207 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||| ||||| |||||||| || || ||||||||||| Sbjct 41208 GATACCATCGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGAATCCCACCCGATCAG 41267 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 || ||| | || | ||| || || Sbjct 41268 CAACGTCTGATCTTCGCTGGTAA 41290 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || |||||| |||| || || || ||||| | || Sbjct 40105 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACTATCACACTCGAGGTGGAGGCTTCG 40164 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| ||||||||||| || || || || ||||| Sbjct 40165 GACACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 40224 Query 27108 CAGCGTTTAATATACGCCGG 27127 || ||| | || | ||| || Sbjct 40225 CAACGTCTGATCTTCGCTGG 40244 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || ||||| ||||| || |||| Sbjct 40794 ATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATCACTCTGGAAGTTGAGGCGTCG 40853 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| || || ||||||||||| || |||||||||||| Sbjct 40854 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAAGGAATTCCACCCGATCAA 40913 Query 27108 CAGCGTTTAATATACGCCGG 27127 || ||| | || | ||| || Sbjct 40914 CAACGTCTCATCTTCGCTGG 40933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || ||||| || || || || | || || ||||| |||||| |||| Sbjct 41814 ATGCAAATATTCGTCAAAACGCTCACGGGTAAAACCATAACGCTTGAGGTGGAAGCGTCG 41873 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || |||||||| || || || ||||| |||||| Sbjct 41874 GATACGATCGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATTCCACCAGATCAA 41933 Query 27108 CAGCGTTTAATATACGCCGGCAAA 27131 |||||| | || | || || ||| Sbjct 41934 CAGCGTCTTATCTTTGCTGGTAAA 41957 >seq739 Length=22138 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||||||||| | || || || ||||||||| | || Sbjct 1299 ATGCAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCATCG 1358 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||||||||| || || |||||||| ||||| || ||| Sbjct 1359 GATACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGACCAA 1418 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 || ||||| || | ||| || || Sbjct 1419 CAACGTTTGATCTTCGCTGGTAA 1441 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 || || ||||||||||| || ||| | || || ||||||||||||||||||||||| Sbjct 1893 GGAAAGCAATTGGAAGATGGTCGTACCCTGTCAGACTACAACATTCAAAAGGAGTCGACA 1952 Query 27186 TTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||| | |||||||| || || Sbjct 1953 TTACATTTGGTTCTTCGTTTGCGTGGGGG 1981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434690040657600