Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16 158 3e-33 seq6064 113 1e-19 seq739 91.5 3e-13 >seq16 Length=240792 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || |||||||| |||||||| ||||||||||||||||| || | || Sbjct 42351 TCCACGGAGACGGAGCACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAGAG 42292 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || ||||| || || ||||| ||||| || || || |||||||| || |||| Sbjct 42291 GGTGCGACCGTCTTCGAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGGAAT 42232 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || ||||||||||| || ||||| || ||||| || || || || ||||| Sbjct 42231 GCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCACCTC 42172 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| || || || ||||| || || | |||||| Sbjct 42171 AAGGGTGATCGTCTTCCCGGTTAGGGTCTTCACGAAGATCTGCAT 42127 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || |||||||| || || |||| |||||| ||||||||||||||| Sbjct 40933 CCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCC 40874 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||||||||| || || ||||| || |||||||||||||| ||||| || Sbjct 40873 TTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAGG 40814 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | ||||||| Sbjct 40813 GTTTTGACGAAGATCTGCATT 40793 Score = 123 bits (136), Expect = 6e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || |||||||| || ||||| || || || || | ||| || |||||||| |||| Sbjct 41292 GCTTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCCTGAATCT 41233 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 || |||||| || |||||||| || || ||||||||||| ||||||||||| || | Sbjct 41232 TTGCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGG 41173 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 |||| ||||| ||||| | |||||| Sbjct 41172 TGAGCGTCTTAACAAATATTTGCATT 41147 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||| | || || ||||| || ||||| || || || |||| ||||||||||| |||||| Sbjct 41637 TGCGTACCCGCAAAGATGAGTCGTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATC 41578 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || |||||| || ||||| ||||| || ||| ||||| || ||||||||||| || Sbjct 41577 TTGGCTTTCACATTCTCGATCGTGTCGGATGCTTCCACCTCAAGGGTGATCGTCTTACCG 41518 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | |||||| Sbjct 41517 GTAAGCGTCTTAACGAAGATCTGCAT 41492 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || |||||||| || ||||| | ||||||||||||||| ||||| Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCC 40523 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| || || || || ||||| || ||||||||||| || || || Sbjct 40522 TTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTCAGC 40463 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 40462 GTTTTAACGAAAATTTGCAT 40443 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || ||||| || || ||||| | || || ||||| ||||| || | Sbjct 40244 CCAGCGAAGATCAGACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTGGCT 40185 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||||||||| || || |||||||| ||||| ||||| || || || Sbjct 40184 TTGACGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTAAGT 40125 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 40124 GTTTTCACGAAAATTTGCAT 40105 >seq6064 Length=3385 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || || |||||||| |||||||||| || ||||| || || ||||| Sbjct 167 CTTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTT 226 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||||||||| || || |||||||| || || |||||||| ||||| Sbjct 227 GGCTTTGACATTTTCGATGGTATCGGATGACTCAACCTCAAGGGTTATCGTCTTACCCGT 286 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | ||||||||| Sbjct 287 TAGGGTCTTGACGAAGATCTGCATTTT 313 >seq739 Length=22138 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | ||||||||||| || || | |||||||| ||||| || || Sbjct 1442 CTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTTT 1383 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | || || |||||||| || || || ||| || || || |||||||| || || || Sbjct 1382 TGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTTTGCCGGT 1323 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || | |||||| Sbjct 1322 CAGTGTCTTGACGAAAATTTGCATT 1298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158528157071825