Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq16 116 2e-21 seq6064 84.2 1e-11 >seq16 Length=240792 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||| || || || || | || Sbjct 42127 ATGCAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTCG 42186 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | |||| | |||||||| || | || ||||| || Sbjct 42187 GATACGATCGAGAATGTGAAGGCTAAAA-TCCAGGACAAAGAGGGCATTCCACCAGACCA 42245 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||||| ||||||| ||||| | ||| || || Sbjct 42246 ACAGCGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAA 42305 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| ||||| Sbjct 42306 CATCCAAAAAGAATCCAC 42323 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||| | | Sbjct 40793 AATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATCACTCTGGAAGTTGAGGCGTC 40852 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| | || ||| || ||||||||||| | || || ||||| Sbjct 40853 GGATACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAAGGAATTCCACCCGATCA 40912 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||| ||| | || || || || Sbjct 40913 ACAACGTCTCATCTTCGCTGG 40933 >seq6064 Length=3385 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| ||||| || ||||| || || || ||||| || Sbjct 313 AAAATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATAACCCTTGAGGTTGAGTCA 254 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| | ||| || ||| || || || ||| | || || ||| Sbjct 253 TCCGATACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATTCCTCCTGAT 194 Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753 ||||| ||| | ||||||||||| || Sbjct 193 CAACAACGTCTGATATTTGCCGGTAA 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337836560738540