Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq16 131 4e-25 seq739 113 1e-19 seq12862 111 4e-19 seq3849 102 2e-16 seq12342 93.3 1e-13 >seq16 Length=240792 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||||||||||||||||| || || |||| | || | || ||| Sbjct 42338 AGCACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAGAGGGTGCGACCGTCT 42279 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || || || |||||||| || ||||| || || ||||| Sbjct 42278 TCGAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGGAATGCCCTCTTTGTCC 42219 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| ||||| || || || | ||||| || | ||||||||| Sbjct 42218 TGGATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCACCTCAAGGGTGATCGTC 42159 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 42158 TTCCCGGTTAGGGTCTTCACGAAGATCTGCAT 42127 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || |||||||| ||||| ||||| ||||| ||||| ||||||||| | Sbjct 40933 CCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCC 40874 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||| || || | || || || | ||||||||||| ||||| | Sbjct 40873 TTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAGG 40814 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | |||||| Sbjct 40813 GTTTTGACGAAGATCTGCATT 40793 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| |||||||| || ||||| || || |||||||| ||||||||||||||||| Sbjct 41956 TTACCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATACCCTCCTTGTCTTGGATCTTC 41897 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||||| || || || | |||||| || | ||| || || || ||||| Sbjct 41896 GCCTTCACATTCTCGATCGTATCCGACGCTTCCACCTCAAGCGTTATGGTTTTACCCGTG 41837 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | |||||| Sbjct 41836 AGCGTTTTGACGAATATTTGCAT 41814 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||| | || || ||||| |||||||| || || || ||||| |||||||||||||||||| Sbjct 41637 TGCGTACCCGCAAAGATGAGTCGTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATC 41578 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| ||||| ||||| || | |||||| || | ||||||||||| || Sbjct 41577 TTGGCTTTCACATTCTCGATCGTGTCGGATGCTTCCACCTCAAGGGTGATCGTCTTACCG 41518 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 41517 GTAAGCGTCTTAACGAAGATCTGCAT 41492 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || |||||||| || || || || ||||||||||| || ||||| | Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCC 40523 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||| || || || | ||||| || | |||||||||||||| |||| Sbjct 40522 TTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTCAGC 40463 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 40462 GTTTTAACGAAAATTTGCAT 40443 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || ||||| || || || || ||||| || ||||||||||| ||| || Sbjct 40244 CCAGCGAAGATCAGACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGAT-TTTGGC 40186 Query 225634 TTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || | | ||||||||||| || | ||||| || | ||||| |||||||| || | Sbjct 40185 TTTGACGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTAAG 40126 Query 225693 AGTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 40125 TGTTTTCACGAAAATTTGCAT 40105 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 || ||| ||| || |||| ||||||||||| || ||||| || ||||| || || || | Sbjct 41306 TCTCATGTTCAAGA-GCTTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCT 41248 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 | ||||| || |||||| |||||| |||||||| || || | || || || | | Sbjct 41247 CTTTGTCCTGAATCTTTGCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGG 41188 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||| || || | || || | || | ||||||| Sbjct 41187 TGATCGTCTTACCGGTGAGCGTCTTAACAAATATTTGCATT 41147 >seq739 Length=22138 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 225563 CTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTT 225622 |||| | ||| ||||||||||| | ||||||||||| || || || |||||||| || | Sbjct 1449 CTAGTTACTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCT 1390 Query 225623 GGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 | || ||| ||| ||| |||||| || || || | |||||| |||| |||||||| | Sbjct 1389 GAATTTTTGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTT 1330 Query 225683 TGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||| |||| || || | ||| | ||||||| Sbjct 1329 TGCCGGTCAGTGTCTTGACGAAAATTTGCATT 1298 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | ||||||||||| || || || || || || || || ||||| Sbjct 1783 CTTACCAGCAAAGATCAACCGTTGTTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTT 1724 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| || ||||| | ||| || || ||||||||||| ||||| || Sbjct 1723 CGCCTTTACATTCTCGATTGTATCTGACGCTTCGACCTCCAACGTGATCGTTTTGCCGGT 1664 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | || | |||||| Sbjct 1663 CAGTGTCTTGACAAAAATTTGCAT 1640 >seq12862 Length=1687 Score = 111 bits (122), Expect = 4e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || || || |||||| ||||| ||||| ||| ||||||||||||| |||||||||| Sbjct 1160 ATGTCAAGAGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 1101 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 1100 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 1041 Query 7845 ATA-TTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 1040 CGACTTAACGCGTTAGCT 1023 >seq3849 Length=5134 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| ||||| ||||| || ||||||||||||| |||||||||| Sbjct 3701 ATGTCAAGGCCTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 3760 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 3761 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 3820 Query 7844 AATATTTACGCGTTAGCT 7861 | || | ||||||||| Sbjct 3821 CAACTTAATGCGTTAGCT 3838 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||||| |||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 4402 TGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 4344 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 4343 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 4304 >seq12342 Length=1752 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| | || |||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 513 TGAGAGGACGACCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 455 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 |||||| |||| || |||||||||||||||| ||||| || |||| Sbjct 454 CAGTGGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATG 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191889392751470