Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq16 158 3e-33 seq6064 129 1e-24 seq739 116 8e-21 >seq16 Length=240792 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || || || | ||| ||||||||||||||| ||||| | Sbjct 42353 CCTCCACGGAGACGGAGCACAAGGTGGAGAGTGGATTCTTTTTGGATGTTATAGTCGGAG 42294 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || |||||||| ||||| || || | ||| |||||||| ||| Sbjct 42293 AGGGTGCGACCGTCTTCGAGTTGTTTGCCGGCGAAAATGAGACGCTGTTGGTCTGGTGGA 42234 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| ||||| || || || || | ||||| || ||||| || || || Sbjct 42233 ATGCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCGATCGTATCCGACGCCTCCACC 42174 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || | ||||| ||||| |||||||| Sbjct 42173 TCAAGGGTGATCGTCTTCCCGGTTAGGGTCTTCACGAAGATCTGCAT 42127 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | ||||| || || ||||| || ||||||||||||||||| ||| Sbjct 41631 CCCGCAAAGATGAGTCGTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATCTTGGCT 41572 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || ||||| || || || |||||||||||||| || | Sbjct 41571 TTCACATTCTCGATCGTGTCGGATGCTTCCACCTCAAGGGTGATCGTCTTACCGGTAAGC 41512 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||||||||| |||||||| Sbjct 41511 GTCTTAACGAAGATCTGCAT 41492 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | ||||||||| || ||||| || || ||||| ||||||||||| Sbjct 40933 CCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCCTGGATCTTTGCC 40874 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || ||||| || || ||||| |||||||||||||||||||| | Sbjct 40873 TTCACATTTTCGATGGTATCCGACGCCTCAACTTCCAGAGTGATCGTCTTACCCGTTAGG 40814 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || ||||| ||||||||| Sbjct 40813 GTTTTGACGAAGATCTGCATT 40793 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || ||||||| |||||| || || || || ||||| ||||| || |||||| Sbjct 41290 TTACCAGCGAAGATCAGACGTTGCTGATCGGGTGGGATTCCCTCTTTGTCCTGAATCTTT 41231 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | ||||| || || ||||| || || ||||| |||||||||||||| || Sbjct 41230 GCTTTCACATTCTCGATGGTATCGGAAGCCTCAACCTCGAGGGTGATCGTCTTACCGGTG 41171 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||| ||||| |||||| Sbjct 41170 AGCGTCTTAACAAATATTTGCATT 41147 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || |||||||| | ||| ||||| || |||||||||||||||||||||||||| Sbjct 41957 TTTACCAGCAAAGATAAGACGCTGTTGATCTGGTGGAATACCCTCCTTGTCTTGGATCTT 41898 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | ||||| || ||||| ||||| || || || || || || |||||||| Sbjct 41897 CGCCTTCACATTCTCGATCGTATCCGACGCTTCCACCTCAAGCGTTATGGTTTTACCCGT 41838 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 | || || |||||||| ||||| Sbjct 41837 GAGCGTTTTGACGAATATTTGCAT 41814 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| |||||| || || || |||||||| ||||||||||| || ||| Sbjct 40244 CCAGCGAAGATCAGACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTGGCT 40185 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||||||||| || || ||||| ||||| ||||| || || | Sbjct 40184 TTGACGTTCTCGATGGTGTCCGAAGCCTCCACCTCGAGTGTGATAGTCTTGCCAGTAAGT 40125 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 40124 GTTTTCACGAAAATTTGCAT 40105 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||||||||| || || || || |||||||| || ||||| || Sbjct 40582 CCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCC 40523 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| || |||||||| || || || || ||||||||||| || |||| Sbjct 40522 TTGACGTTCTCGATCGTATCCGAAGCCTCCACCTCAAGGGTGATCGTCTTGCCAGTCAGC 40463 Query 283080 GTCTTAACGAATATCTGCAT 283099 || |||||||| || ||||| Sbjct 40462 GTTTTAACGAAAATTTGCAT 40443 >seq6064 Length=3385 Score = 129 bits (142), Expect = 1e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||| |||| ||||||||| ||| |||||||||||||| ||||| ||||| Sbjct 168 TTACCGGCAAATATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCTTGAATCTTG 227 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | ||||| || || || | || || || || || |||||||||||||| Sbjct 228 GCTTTGACATTTTCGATGGTATCGGATGACTCAACCTCAAGGGTTATCGTCTTACCCGTT 287 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| ||||| ||||||||||| Sbjct 288 AGGGTCTTGACGAAGATCTGCATTTT 313 >seq739 Length=22138 Score = 116 bits (128), Expect = 8e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 |||||| || || || |||||||||||||||||||| || || || ||||| || | Sbjct 1449 CTAGTTACTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTATCCT 1390 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 | || ||||| || || | ||||| || ||||| ||||| ||||| || |||||||| | Sbjct 1389 GAATTTTTGCCTTGACATTTTCGATTGTATCCGATGCTTCCACTTCTAGTGTGATCGTTT 1330 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | || |||| ||||| ||||| || |||||| Sbjct 1329 TGCCGGTCAGTGTCTTGACGAAAATTTGCATT 1298 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||||||||| ||||||||||| || || ||||| || || || ||||| Sbjct 1782 TTACCAGCAAAGATCAACCGTTGTTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTC 1723 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | ||||| || || || |||||||| || | |||||||| || || ||| Sbjct 1722 GCCTTTACATTCTCGATTGTATCTGACGCTTCGACCTCCAACGTGATCGTTTTGCCGGTC 1663 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| || || || ||||| Sbjct 1662 AGTGTCTTGACAAAAATTTGCAT 1640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046175856411270