Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq16 150 4e-31 seq739 109 1e-18 >seq16 Length=240792 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||||||||| |||||||| || || Sbjct 42130 CAGATCTTCGTGAAGACCCTAACCGGGAAGACGATCACCCTTGAGGTGGAGGCGTCGGAT 42189 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || || ||||||||||| || || || || ||||| || Sbjct 42190 ACGATCGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGCATTCCACCAGACCAACAG 42249 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| |||||||| || | || || |||| |||||| || Sbjct 42250 CGTCTCATTTTCGCCGGCAAACAACTCGAAGACGGTCGCACCCTCTCCGACTATAACATC 42309 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || ||||| Sbjct 42310 CAAAAAGAATCCACTCTCCACCTTGT 42335 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || || || ||||| ||||||||||| || ||| Sbjct 40108 CAAATTTTCGTGAAAACACTTACTGGCAAGACTATCACACTCGAGGTGGAGGCTTCGGAC 40167 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||||| || || || |||||||| || |||||||| || |||||| Sbjct 40168 ACCATCGAGAACGTCAAAGCCAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAGCAA 40227 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 40228 CGTCTGATCTTCGCTGG 40244 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || || ||||||||||| |||||||| || || Sbjct 40446 CAAATTTTCGTTAAAACGCTGACTGGCAAGACGATCACCCTTGAGGTGGAGGCTTCGGAT 40505 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| |||||||||||||| |||||||||||||| || || ||| Sbjct 40506 ACGATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCAGATCAACAA 40565 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 40566 CGTCTGATCTTCGCTGG 40582 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || ||||||||||||||||| || || || Sbjct 41151 CAAATATTTGTTAAGACGCTCACCGGTAAGACGATCACCCTCGAGGTTGAGGCTTCCGAT 41210 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| |||||||||||||||||| |||||||| || || |||||| Sbjct 41211 ACCATCGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGAATCCCACCCGATCAGCAA 41270 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || |||||||| || || Sbjct 41271 CGTCTGATCTTCGCTGGTAA 41290 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||||||||| ||||||||| || ||| Sbjct 41495 CAGATCTTCGTTAAGACGCTTACCGGTAAGACGATCACCCTTGAGGTGGAAGCATCCGAC 41554 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||| || ||||| ||||| || || ||||| |||||| Sbjct 41555 ACGATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAGCAA 41614 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 41615 CGACTCATCTTTGCGGG 41631 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || |||||||| || || || || || || Sbjct 40797 CAGATCTTCGTCAAAACCCTAACGGGTAAGACGATCACTCTGGAAGTTGAGGCGTCGGAT 40856 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| ||||||||||||||||| || || || || ||| Sbjct 40857 ACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAAGGAATTCCACCCGATCAACAA 40916 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 40917 CGTCTCATCTTCGCTGG 40933 >seq739 Length=22138 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||||||||| || || |||||| || || Sbjct 1302 CAAATTTTCGTCAAGACACTGACCGGCAAAACGATCACACTAGAAGTGGAAGCATCGGAT 1361 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 1362 ACAATCGAAAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATCCCACCAGACCAACAA 1421 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | |||||||| || || Sbjct 1422 CGTTTGATCTTCGCTGGTAA 1441 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||||||||| | ||||| ||| ||||| Sbjct 1643 CAAATTTTTGTCAAGACACTGACCGGCAAAACGATCACGTTGGAGGTCGAAGCGTCAGAT 1702 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 1703 ACAATCGAGAATGTAAAGGCGAAGATTCAGGATAAAGAGGGCATCCCACCAGACCAACAA 1762 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| || || || Sbjct 1763 CGGTTGATCTTTGCTGGTAA 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203083365033970