Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq108 113 5e-20 seq9998 91.5 2e-13 seq6022 87.8 2e-12 >seq108 Length=252163 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || ||||| || || || | || || || || || Sbjct 244478 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 244419 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | || | || |||| || || ||||| || || | || ||| Sbjct 244418 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 244359 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||||||||||| ||||| |||| || ||||| ||||| ||| Sbjct 244358 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 244299 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || || || ||| Sbjct 244298 ATCCAGAAGGAGTCCACTCTCCACCTCGTG 244269 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||||||||| |||| || ||||| || Sbjct 246368 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCC 246309 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || |||| ||||||||||||||||| |||| || Sbjct 246308 GATACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAA 246249 Query 40810 CAACGACTCATCT 40822 || |||||||||| Sbjct 246248 CAGCGACTCATCT 246236 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||| || ||||| |||| || || || | Sbjct 248264 ATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTGGAGGCGTCA 248205 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||||||||||||||| | ||||| Sbjct 248204 GATACAATTGAGAACG-TCAAGGCCAAGATACAGGACAAAGAGGGCATCCCGCCTGACCA 248146 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||||| ||||||| ||| || Sbjct 248145 ACAACGTCTCATCTTCGCCGG 248125 >seq9998 Length=2827 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||||| |||||||| ||||| | ||||| || | |||||| || ||||| Sbjct 1745 GGTGGAGCGTTTCGCCCAGGAGGTACAGGTTCCTGAGGCACGTTTCTTCTATGGTTTTCA 1686 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 ||| || |||||| | |||||||| |||||||||| Sbjct 1685 AATCATGATAGAGAACATTCACTCGGAGATGTATTCGA 1648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 |||| |||||||| || || || || ||||||||||||||||| || ||||||||||| | Sbjct 293 TCTTTTTTTCGGGAAGCTTTGCGGCGATATTTTGGCTCAAGAAGCGTGGCCTCATGCCTG 234 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | | || |||||| ||||| || || || || |||| Sbjct 233 GATTAACGCACAGCAATGAGCTTATTTCAAGAGATGAGG 195 >seq6022 Length=9468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||||| ||||| || ||||| | ||||| || | |||||| || ||||| Sbjct 9016 GGTGGAGCGTTTCGCCCAGGAAGTACAGGTTCCTGAGGCACGTTTCTTCTATGGTTTTCA 8957 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 ||| || |||||| | |||||||| |||||||||| Sbjct 8956 AATCATGATAGAGAACATTCACTCGGAGATGTATTCGA 8919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 |||| |||||||| || || || || ||||||||||||||||| || ||||||||||| | Sbjct 7392 TCTTTTTTTCGGGAAGCTTTGCGGCGATATTTTGGCTCAAGAAGCGTGGCCTCATGCCTG 7333 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | |||| ||||| ||||| || || || || |||| Sbjct 7332 GATTGACGCATAGCAATGAGCTTATTTCAAGAGATGAGG 7294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515014979989600