Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq320 96.9 4e-15 seq31476 95.1 1e-14 seq30691 95.1 1e-14 seq27354 95.1 1e-14 seq21700 95.1 1e-14 seq10577 95.1 1e-14 seq2512 95.1 1e-14 seq1284 95.1 1e-14 seq467 95.1 1e-14 seq6 95.1 1e-14 seq17855 91.5 2e-13 seq108 87.8 2e-12 >seq320 Length=140168 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 96237 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 96296 Query 60126 TACTACCGAGGATTGAAT 60143 |||||||||||| || || Sbjct 96297 TACTACCGAGGACTGCAT 96314 >seq31476 Length=505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 63 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 64 TACTACCGAGGA 75 >seq30691 Length=526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 325 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 384 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 385 TACTACCGAGGA 396 >seq27354 Length=646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 444 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 385 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 384 TACTACCGAGGA 373 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 291 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 232 Query 60126 TACTACCGAGGA 60137 |||| ||||||| Sbjct 231 TACTGCCGAGGA 220 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| | ||||||||||| Sbjct 598 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGACACTCACCACTA 539 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 538 TACTACCGAGGA 527 >seq21700 Length=937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 16 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 75 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 76 TACTACCGAGGACTG 90 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 318 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 377 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 378 TACTACCGAGGA 389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 469 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 528 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 529 TACTACCGAGGA 540 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| |||||| | |||||||||||| ||||||||||| ||||||||||| Sbjct 785 GGGAATCGAACCCGGGTCTCGCACGTGACAGGCGGGGATACTCACCACGATACTACCGAG 844 Query 60136 GATTG 60140 || || Sbjct 845 GACTG 849 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||| ||||| |||||| | ||||||||||| ||||||| ||||| Sbjct 623 CTCCCCGGCCGGGAATCCAACCCGGGTCTCGCACGTGACAGGCGCCGATACTCATCACTA 682 Query 60126 TACTACCGAGGATTG 60140 |||||| ||||| || Sbjct 683 TACTACGGAGGACTG 697 >seq10577 Length=2480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 159 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 100 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 99 TACTACCGAGGA 88 >seq2512 Length=29856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4887 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 4828 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 4827 TACTACCGAGGA 4816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 5062 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 5003 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 5002 TACTACCGAGGA 4991 >seq1284 Length=53801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 16654 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 16595 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 16594 TACTACCGAGGA 16583 >seq467 Length=112660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 17629 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 17570 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 17569 TACTACCGAGGA 17558 >seq6 Length=785699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 701162 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 701221 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 701222 TACTACCGAGGACTG 701236 >seq17855 Length=1205 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 820 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 761 Query 60126 TACTACCGAG 60135 |||||||||| Sbjct 760 TACTACCGAG 751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| |||| ||||||||||| | |||||| | ||||||||||| |||||||||||||| Sbjct 79 TCCCCGGCCGGGAATCGAACACGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTAT 20 Query 60127 ACTACCGAGGA 60137 ||||| ||||| Sbjct 19 ACTACAGAGGA 9 >seq108 Length=252163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || |||| ||||||||||| || |||||||| ||||||||||| | Sbjct 245453 CCTCCTCTCAATCGCAGCACCAAATGCAGCGTAGATTCCTTTTGTATATTGTAATCTGAT 245512 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATAT 43054 ||||| || |||| || ||||||||||| || ||||| Sbjct 245513 AGAGTGCGACCGTCTTCAAGCTGCTTACCTGCAAATAT 245550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || | ||| || || |||| || || || || || || || Sbjct 244287 CTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAA 244346 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||||||||||||| |||| ||| | | |||||| | | ||| | || | ||| | Sbjct 244347 GATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTAT-CTTGAATCTTGGCTTTCACAT 244405 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | || ||| || ||||| || | || || || ||||| || |||||||| | Sbjct 244406 TCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCA 244465 Query 43171 CAAAGATTTGCAT 43183 | || |||||||| Sbjct 244466 CGAAAATTTGCAT 244478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571590945798800