Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 122 8e-23 seq1742 104 2e-17 seq108 102 7e-17 seq6031 84.2 2e-11 seq6022 84.2 2e-11 seq560 84.2 2e-11 >seq11 Length=636740 Score = 122 bits (134), Expect = 8e-23 Identities = 119/152 (78%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 |||||| |||||| |||||||| || | |||||| || || |||||| | |||| Sbjct 138021 AACAAATCTGTTGAGCGCGATCGATGCCAAATTGCAGACTGCGACCTCGGTTGGCGACGA 137962 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| || ||||||||||| ||||| ||||||||| || |||| ||| ||| || Sbjct 137961 GTACTCAACGATTTCGGTACAAAGATTCGAACACTTTATTGTACCCACATTCTGCTGATT 137902 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCA 23156 ||| ||||||||||| | |||| ||||||||| Sbjct 137901 GCTCTTTCGATTGCATGCATCC-TGTAGAGCA 137871 >seq1742 Length=41667 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| ||||| |||||||||||| | || || ||| |||| Sbjct 31432 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31373 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| |||||| || || | || ||||||||| Sbjct 31372 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31313 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| |||||||| || Sbjct 31312 CAACGTCTTATATTCGCCGG 31293 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| ||||| |||||||||||| | || || ||| |||| Sbjct 31736 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31677 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| |||||| || || | || ||||||||| Sbjct 31676 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31617 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| |||||||| || Sbjct 31616 CAACGTCTTATATTCGCCGG 31597 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| ||||| |||||||||||| | || || ||| ||| Sbjct 22873 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTTG 22932 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| |||||| || || | || ||||||||| Sbjct 22933 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 22992 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| |||||||| || Sbjct 22993 CAACGTCTTATATTCGCCGG 23012 >seq108 Length=252163 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| ||||||||||| || || || | || || || |||| Sbjct 244479 CATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTC 244420 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | |||| | || ||| | || || ||||| || | |||||||| || Sbjct 244419 CGATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCA 244360 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || |||||||| |||| ||| || || || ||||| Sbjct 244359 GCAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAA 244300 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || ||||| || || || ||| Sbjct 244299 CATCCAGAAGGAGTCCACTCTCCACCTCGTGCTT 244266 >seq6031 Length=9456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||||||| | |||||||||||||||||||| ||||| ||| |||||||||| || |||| Sbjct 4489 AGGTATAATGTTTTCGGGCAGCTTTGCGGCGATATTCTGGCTGAAGAAACGAGGTGTGAT 4548 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 | ||| | ||| |||||||| | || || || || |||| Sbjct 4549 GAAAGGCTTAACGCACAGCAACGAACTTATCTCCCGTGATGAGG 4592 >seq6022 Length=9468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||| || || |||||||| ||||||||||| ||||||||| | ||||| || ||||| || Sbjct 7397 AGGAATCTTTTTTTCGGGAAGCTTTGCGGCGATATTTTGGCTCAAGAAGCGTGGCCTCAT 7338 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 ||| || ||||| |||||| ||| | || || | || |||| Sbjct 7337 GCCTGGATTGACGCATAGCAATGAGCTTATTTCAAGAGATGAGG 7294 >seq560 Length=97729 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| | || || ||||| || || || || ||||||||| | || || || || || Sbjct 88944 CATGCAGCTCTTTGTCAAGACGCTAACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTC 88885 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| || ||| || || ||||||||| || | ||||||||||| Sbjct 88884 CGACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCA 88825 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 ||| ||||| || || || || Sbjct 88824 GCAACGTCTCATCTTTGCCGG 88804 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| ||||| || |||| || || | || Sbjct 79796 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 79737 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| || ||| |||||||||||| | | |||||||| Sbjct 79736 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 79677 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || ||||| || Sbjct 79676 CAGCGTCTGATCTTCGCAGG 79657 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| ||||| || |||| || || | || Sbjct 88443 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 88384 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| || ||| ||||||||||| | || |||||||| Sbjct 88383 GACACAATCGAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGTATCCCACCCGACCAA 88324 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || ||||| || Sbjct 88323 CAGCGTCTGATCTTCGCAGG 88304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445589709343200