Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq11 122 8e-23
seq1742 104 2e-17
seq108 102 7e-17
seq6031 84.2 2e-11
seq6022 84.2 2e-11
seq560 84.2 2e-11
>seq11
Length=636740
Score = 122 bits (134), Expect = 8e-23
Identities = 119/152 (78%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064
|||||| |||||| |||||||| || | |||||| || || |||||| | ||||
Sbjct 138021 AACAAATCTGTTGAGCGCGATCGATGCCAAATTGCAGACTGCGACCTCGGTTGGCGACGA 137962
Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124
|||||| || ||||||||||| ||||| ||||||||| || |||| ||| ||| ||
Sbjct 137961 GTACTCAACGATTTCGGTACAAAGATTCGAACACTTTATTGTACCCACATTCTGCTGATT 137902
Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCA 23156
||| ||||||||||| | |||| |||||||||
Sbjct 137901 GCTCTTTCGATTGCATGCATCC-TGTAGAGCA 137871
>seq1742
Length=41667
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| ||||| |||||||||||| | || || ||| ||||
Sbjct 31432 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31373
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || ||| |||||| || || | || |||||||||
Sbjct 31372 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31313
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| |||||||| ||
Sbjct 31312 CAACGTCTTATATTCGCCGG 31293
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| ||||| |||||||||||| | || || ||| ||||
Sbjct 31736 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31677
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || ||| |||||| || || | || |||||||||
Sbjct 31676 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31617
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| |||||||| ||
Sbjct 31616 CAACGTCTTATATTCGCCGG 31597
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| ||||| |||||||||||| | || || ||| |||
Sbjct 22873 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTTG 22932
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || ||| |||||| || || | || |||||||||
Sbjct 22933 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 22992
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| |||||||| ||
Sbjct 22993 CAACGTCTTATATTCGCCGG 23012
>seq108
Length=252163
Score = 102 bits (112), Expect = 7e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||||||||| ||||| ||||||||||| || || || | || || || ||||
Sbjct 244479 CATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTC 244420
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | |||| | || ||| | || || ||||| || | |||||||| ||
Sbjct 244419 CGATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCA 244360
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || || |||||||| |||| ||| || || || |||||
Sbjct 244359 GCAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAA 244300
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||| || || || || ||||| || || || |||
Sbjct 244299 CATCCAGAAGGAGTCCACTCTCCACCTCGTGCTT 244266
>seq6031
Length=9456
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057
||||||| | |||||||||||||||||||| ||||| ||| |||||||||| || ||||
Sbjct 4489 AGGTATAATGTTTTCGGGCAGCTTTGCGGCGATATTCTGGCTGAAGAAACGAGGTGTGAT 4548
Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
| ||| | ||| |||||||| | || || || || ||||
Sbjct 4549 GAAAGGCTTAACGCACAGCAACGAACTTATCTCCCGTGATGAGG 4592
>seq6022
Length=9468
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057
||| || || |||||||| ||||||||||| ||||||||| | ||||| || ||||| ||
Sbjct 7397 AGGAATCTTTTTTTCGGGAAGCTTTGCGGCGATATTTTGGCTCAAGAAGCGTGGCCTCAT 7338
Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
||| || ||||| |||||| ||| | || || | || ||||
Sbjct 7337 GCCTGGATTGACGCATAGCAATGAGCTTATTTCAAGAGATGAGG 7294
>seq560
Length=97729
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| | || || ||||| || || || || ||||||||| | || || || || ||
Sbjct 88944 CATGCAGCTCTTTGTCAAGACGCTAACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTC 88885
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||||| || ||| || || ||||||||| || | |||||||||||
Sbjct 88884 CGACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCA 88825
Query 31312 GCAGCGTCTAATATTCGCTGG 31332
||| ||||| || || || ||
Sbjct 88824 GCAACGTCTCATCTTTGCCGG 88804
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || ||||| ||||| || |||| || || | ||
Sbjct 79796 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 79737
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| ||||| || ||| |||||||||||| | | ||||||||
Sbjct 79736 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 79677
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|||||||| || ||||| ||
Sbjct 79676 CAGCGTCTGATCTTCGCAGG 79657
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || ||||| ||||| || |||| || || | ||
Sbjct 88443 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 88384
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| ||||| || ||| ||||||||||| | || ||||||||
Sbjct 88383 GACACAATCGAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGTATCCCACCCGACCAA 88324
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|||||||| || ||||| ||
Sbjct 88323 CAGCGTCTGATCTTCGCAGG 88304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445589709343200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |