Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq108 114 3e-20 seq51 91.5 3e-13 >seq108 Length=252163 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||||||||| ||||| || || ||||| ||||||||||| Sbjct 246226 TTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTTC 246285 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | |||||| | |||||| || ||||| || || ||||| || Sbjct 246286 GCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGTG 246345 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| Sbjct 246346 AGGGTCTTGACGAAGATCTGCAT 246368 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || ||||| | ||| |||||||||||||| |||||||||||||| || ||||| Sbjct 244894 CCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCC 244953 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | || || | ||| || || || || || ||||| || || | Sbjct 244954 TTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCAAC 245013 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 245014 GTTTTCACGAAGATCTGCAT 245033 >seq51 Length=344957 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | ||| || || ||||| ||||| || || |||||||||||||| Sbjct 218132 CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCC 218191 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| || || || || ||||| || |||||||| || || Sbjct 218192 TTCACATTTTCAATAGTATCCGAAGCCTCGACTTCGAGTGTTATTGTCTTACCGGTTAGG 218251 Query 104540 GTTTTTACAAATATCTGCATTTT 104562 ||||| | || || ||||| || Sbjct 218252 GTTTTGATGAAGATTTGCATCTT 218274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150930604820680