Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1178 159 5e-35 seq2700 150 3e-32 seq346 149 1e-31 seq4494 140 5e-29 seq1000 118 2e-22 seq253 98.7 2e-16 >seq1178 Length=58056 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| |||||||| |||||||||||||| || || ||||| || || || ||| Sbjct 15619 CTTCGTGATAATATCCAAGGTATCACCAAGCCAGCAATTCGCCGTCTTGCCCGACGAGGT 15678 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | || || | |||| ||||||| || | || ||||| |||| Sbjct 15679 GGAGTGAAGCGTATTTCGGGTCTCATCTACGAAGAGACACGAGGCGTCCTGAAGGTCTTT 15738 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || || | |||||| || ||| |||||| || ||||| ||||||||| Sbjct 15739 CTGGAGAATGTCATTCGTGATGCAGTCACCTACTGCGAGCATGCGAAACGGAAGACTGTC 15798 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| ||||||| ||| ||||||| ||||| | | | | || || || ||| Sbjct 15799 ACTGCAATGGATGTCGTCTACGCACTGAAACGCCAAGGTAGAACGCTGTACGGCTTCGGA 15858 Query 16694 AGTTAA 16699 | ||| Sbjct 15859 GGCTAA 15864 >seq2700 Length=27275 Score = 150 bits (166), Expect = 3e-32 Identities = 183/243 (75%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || |||||||| | | | || || ||||| |||||||| |||||||| || || | Sbjct 4718 CGCAAAACGTCATCGTA-AGGTGTTGCGTGATAATATCCAAGGTATCACCAAACCTGCGA 4660 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||| | || | ||||||||||| || ||| | || || | |||||||||| | Sbjct 4659 TTCGTCGTTTAGCCAGACGTGGTGGAGTGAAACGTATATCCGGTCTCATCTATGAAGAAA 4600 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC-- 16608 | | || |||||| ||||||| ||| |||||| | |||||| | ||| |||| Sbjct 4599 CGAGAGGAGTCTTGAAGGTCTTCCTTGAGAACGTTATTCGTGATGCGGT-CAC-ATACTG 4542 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 ||| ||||| || || ||||| |||||| | |||||| |||||||||| ||||||| || Sbjct 4541 CGAACACGCAAAGCGGAAGACAGTCACCGCAATGGATGTCGTCTATGCTCTGAAACGCCA 4482 Query 16669 AGG 16671 ||| Sbjct 4481 AGG 4479 >seq346 Length=135079 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | ||||| || |||||||| || |||||||||||||| || Sbjct 39380 GCCAAGCGGCATCGTAAAGTGCTTCGCGACAACATCCAGGGTATCACCAAGCCAGCAATT 39439 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || || |||||||| |||||| | || || | | || ||||||| Sbjct 39440 CGTCGTCTTGCACGCCGAGGTGGAGTGAAGCGTATTTCGGGCCTTATATACGAAGAGACG 39499 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| |||| || ||| ||| || | |||||| || ||| ||| Sbjct 39500 CGAGGAGTCCTGAAAGTCTTTCTGGAGAACGTGATTCGTGATGCAGTCACGTATTGTGAG 39559 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || |||||||| || | ||||| ||||||| || |||||||| || ||| Sbjct 39560 CATGCCAAGCGGAAGACTGTAACAGCGATGGACGTCGTCTACGCCTTGAAACGCCAGGGC 39619 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | || || |||||| | ||| Sbjct 39620 AGAACGCTGTACGGCTTTGGAGGCTAA 39646 >seq4494 Length=14906 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | ||||| || || || ||||||||||| |||||||||||| Sbjct 5114 GCAAAACGTCATCGTAAAGTGCTTCGTGACAATATTCAAGGAATCACTAAGCCAGCTATC 5055 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || ||||| || || ||||| ||| | || || | |||| || || | | Sbjct 5054 CGTCGTTTAGCCCGTCGAGGCGGTGTCAAACGTATTTCGGGTCTTATCTACGAGGAAACT 4995 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || || ||||| | || || ||| || || | |||||| || ||| ||| Sbjct 4994 CGCAGCGTACTGAAGGTTTTTCTGGAGAATGTGATTCGTGATGCGGTCACGTATTGTGAG 4935 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| ||||| || || | |||||| |||| |||||| | ||||| |||||| Sbjct 4934 CATGCAAAACGCAAGACCGTTACTGCTATGGATGTCGTTTATGCACTTAAACGCCAAGGC 4875 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | ||||| || || Sbjct 4874 CGAACGTTGTATGGATTCGG 4855 >seq1000 Length=65273 Score = 118 bits (130), Expect = 2e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| ||||| || |||||||| || ||||| ||||| |||||| Sbjct 43700 GCTAAGCGTCATCGCAAGGTACTTCGCGACAACATCCAGGGCATCACTAAGCCGGCTATC 43759 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||| ||||| || |||||| | |||||| | |||| || |||| | Sbjct 43760 CGACGTCTTGCTCGTCGAGGTGGTGTGAAGCGTATTTCTGGACTCATCTACGAGGAGACT 43819 Query 16553 CGTGATGTTTTGAAG 16567 || |||| ||||| Sbjct 43820 CGCAGTGTTCTGAAG 43834 >seq253 Length=164018 Score = 98.7 bits (108), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | | |||| |||||||||| || |||||||||||||| || Sbjct 88142 GCAAAGAGGCATCGCAAGGTGT-TTCGTAATAACATCCACGGCATCACCAAGCCAGCAAT 88200 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | || ||||| |||||||| |||||| | || || || | | |||||| Sbjct 88201 TCGCCGTATTGCCCGTCGAGGTGGAGTAAAGCGTATTTCGGGTTTCATGGACAAAGAGAC 88260 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | | |||| ||||| | ||| ||| |||| ||||||| || |||| ||| Sbjct 88261 ACGAGGCATCCTGAAAGTCTTCTTGGAGAACGTCATCCGTGATGCTGTCACCTATTGCGA 88320 Query 16612 GCA 16614 ||| Sbjct 88321 GCA 88323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79046207325030