Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq108 95.1 1e-14 seq560 91.5 1e-13 >seq108 Length=252163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || ||| | ||||| | || ||||| |||| Sbjct 246866 ATGCAAATATTTGTGAAGACATTGACTGGCAAAACTATCACTCTGGAGGTGGAAGCGTCG 246807 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| |||||||||||||| || || Sbjct 246806 GACACAATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 246747 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| |||| || || || Sbjct 246746 CAGCGCCTTATCTTCGCTGG 246727 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||||||| || | ||||| |||||||||| ||||| Sbjct 245033 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACGCTCGAAGTGGAAGCGTCT 244974 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| ||||||| || ||||||||||| || ||||| || Sbjct 244973 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 244914 Query 25119 CAGCG 25123 ||||| Sbjct 244913 CAGCG 244909 >seq560 Length=97729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | ||||| || | || ||| ||||||||||||| || Sbjct 88443 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 88384 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| || ||||| |||||| Sbjct 88383 GACACAATCGAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGTATCCCACCCGACCAA 88324 Query 25119 CAGCG 25123 ||||| Sbjct 88323 CAGCG 88319 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | ||||| || | || ||| ||||||||||||| || Sbjct 79796 ATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 79737 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| || | || |||||| Sbjct 79736 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCAA 79677 Query 25119 CAGCG 25123 ||||| Sbjct 79676 CAGCG 79672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433160533623650