Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1742 118 9e-22 seq108 111 1e-19 seq51 87.8 2e-12 seq560 86.0 5e-12 >seq1742 Length=41667 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || |||||| |||| ||||| |||||| | | Sbjct 31432 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31373 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||||||||||||||| || Sbjct 31372 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31313 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||||||||| ||||| Sbjct 31312 CAACGTCTTATATTCGCCGG 31293 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || |||||| |||| ||||| |||||| | | Sbjct 31736 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTCG 31677 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||||||||||||||| || Sbjct 31676 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 31617 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||||||||| ||||| Sbjct 31616 CAACGTCTTATATTCGCCGG 31597 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || |||||| |||| ||||| |||||| | Sbjct 22873 ATGCAAATTTTTGTGAAGACTCTCACAGGAAAAACGATCACCCTTGAGGTGGAAGCGTTG 22932 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||||||||||||||| || Sbjct 22933 GACACGATCGAGAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATTCCACCCGACCAG 22992 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||||||||| ||||| Sbjct 22993 CAACGTCTTATATTCGCCGG 23012 >seq108 Length=252163 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || ||||| || ||||||||||| ||||||| || |||||| | | Sbjct 247402 GATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTC 247343 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || ||||| || || || |||||||| || || ||||| ||||| Sbjct 247342 GGATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 247283 Query 22338 ACAACGTCTTATATTTGCCGGCAA 22361 ||||||||||| || ||||| || Sbjct 247282 GCAACGTCTTATCTTCGCCGGTAA 247259 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || | ||| | || ||||| | || Sbjct 244478 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 244419 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || |||||||| ||||||||||| || |||||||| Sbjct 244418 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 244359 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| |||||||| | ||||| ||| ||| | || || || ||| Sbjct 244358 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 244299 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 244298 ATCCAGAAGGAGTCCAC 244282 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || || || ||||| |||||||| | || || || ||||| | | Sbjct 245452 GATGCAAATTTTCGTGAAGACGTTAACGGGTAAAACCATTACACTCGAGGTGGAGGCGTC 245393 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || | || || || ||||||||||||||||| ||||| ||||| Sbjct 245392 CGATACGATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCA 245333 Query 22338 ACAACGTCTTATATTTGCCGG 22358 || || || || ||||| || Sbjct 245332 GCAGCGGCTCATCTTTGCTGG 245312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| ||||||||| | |||||| ||||| ||||||| || |||||||| |||||| Sbjct 246464 TTTGCAGGCAAACAGCTCGAGGATGGACGCACACTCTCCGACTATAACATTCAGAAAGAA 246405 Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || | ||| | || ||||||||||| || ||| Sbjct 246404 TCAACGTTGCATCTCGTGTTGCGATTGCGTGGCGGT 246369 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || ||||| ||||||| || |||||| | | Sbjct 246866 ATGCAAATATTTGTGAAGACATTGACTGGCAAAACTATCACTCTGGAGGTGGAAGCGTCG 246807 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||||||||| || |||||||| ||||| Sbjct 246806 GACACAATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 246747 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| || || || Sbjct 246746 CAGCGCCTTATCTTCGCTGG 246727 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||| | || || || ||| ||||||| |||||||| | | Sbjct 248264 ATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACGATCACTCTCGAAGTGGAGGCGTCA 248205 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || || ||||| ||||| || || || || ||| Sbjct 248204 GATACAATTGAGAACGTCAAGGCCAAGATACAGGACAAAGAGGGCATCCCGCCTGACCAA 248145 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || || ||||| Sbjct 248144 CAACGTCTCATCTTCGCCGG 248125 >seq51 Length=344957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || | ||||| |||||||||| || | || || ||||| || | Sbjct 218274 AAGATGCAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCT 218215 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 218214 TCGGATACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGAC 218155 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 || || ||||| || || ||||| Sbjct 218154 CAGCAGCGTCTGATCTTCGCCGG 218132 >seq560 Length=97729 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || |||| || || ||| |||| ||||| || || | || Sbjct 88943 ATGCAGCTCTTTGTCAAGACGCTAACGGGGAAGACGATCACCCTTGAGGTCGAGCCTTCC 88884 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || ||||| |||||||||||||| || ||||| || Sbjct 88883 GACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 88824 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || |||||||| Sbjct 88823 CAACGTCTCATCTTTGCCGG 88804 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || |||||| | || | ||||| || || | Sbjct 87638 ATGCAAATCTTCGTCAAAACGCTCACTGGCAAAACGTTGACGTTGGAAGTCGAGCCCTCT 87579 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | ||| | || |||| || |||||||||||||| || || || ||||||||| Sbjct 87578 GATGCAGTGCAGCATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCCGATCAA 87519 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || ||||| || || Sbjct 87518 CAGCGACTCATATTCGCAGG 87499 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| | || || |||||||| | | Sbjct 88443 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 88384 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||||| ||||||||||| ||||| |||||||| ||| Sbjct 88383 GACACAATCGAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGTATCCCACCCGACCAA 88324 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || || || || Sbjct 88323 CAGCGTCTGATCTTCGCAGG 88304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419565789556150