Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq108 131 3e-25
seq1742 118 2e-21
seq560 113 8e-20
seq254 96.9 6e-15
seq25738 89.7 9e-13
seq4681 86.0 1e-11
seq715 86.0 1e-11
seq575 86.0 1e-11
seq51 86.0 1e-11
seq2855 84.2 4e-11
>seq108
Length=252163
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||||||||| || | || | ||| || |||||||| || ||||||||||| || ||
Sbjct 244252 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 244311
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | || || || || || ||||||| || || ||||| ||
Sbjct 244312 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 244371
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| || || || |||||| || || | | || ||
Sbjct 244372 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACC 244431
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || || || || || ||||| ||||| || |||||
Sbjct 244432 TCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 244478
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || ||||||| ||||| || || || ||||| || ||||| ||||||||
Sbjct 246225 CTTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTT 246284
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
||||| || ||||| || || | || ||||||||| | ||||||||||| || ||
Sbjct 246285 CGCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGT 246344
Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461
||||||||||||||| ||||||||
Sbjct 246345 GAGGGTCTTGACGAAGATCTGCAT 246368
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || || | || || || |||||||| |||||||||||||| ||||| |||
Sbjct 246727 CCAGCGAAGATAAGGCGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCC 246786
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|||||| |||||| ||||| | | ||| || |||| ||||| ||||| || || |
Sbjct 246787 TTGACGTTCTCGATTGTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAAT 246846
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| || ||||| |||||
Sbjct 246847 GTCTTCACAAATATTTGCAT 246866
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376
|||| |||||||| || || | ||| || || ||||| || ||||||||||| || ||||
Sbjct 247257 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 247316
Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
| || ||||| || || || || | | ||| || || | ||||||||||| || |
Sbjct 247317 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 247376
Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461
| | || || ||||| ||||||||
Sbjct 247377 TCAACGTTTTCACGAAAATCTGCAT 247401
>seq1742
Length=41667
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
||||||||||| || | ||| |||||||||||||| || || ||||| ||||| || |||
Sbjct 31293 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 31352
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || |||||| ||||| | | ||| || || | |||||| |||||||| |||||
Sbjct 31353 TTTACATTCTCGATCGTGTCCGACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 31412
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| || || || |||||
Sbjct 31413 GTCTTCACAAAAATTTGCAT 31432
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
||||||||||| || | ||| |||||||||||||| || || ||||| ||||| || |||
Sbjct 31597 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 31656
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || |||||| ||||| | | ||| || || | |||||| |||||||| |||||
Sbjct 31657 TTTACATTCTCGATCGTGTCCGACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 31716
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| || || || |||||
Sbjct 31717 GTCTTCACAAAAATTTGCAT 31736
Score = 113 bits (124), Expect = 8e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
||||||||||| || | ||| |||||||||||||| || || ||||| ||||| || |||
Sbjct 23012 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 22953
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || |||||| ||||| | ||| || || | |||||| |||||||| |||||
Sbjct 22952 TTTACATTCTCGATCGTGTCCAACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 22893
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| || || || |||||
Sbjct 22892 GTCTTCACAAAAATTTGCAT 22873
>seq560
Length=97729
Score = 113 bits (124), Expect = 8e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || || | |||||||||||||| || |||||||||||||| || || |||
Sbjct 88304 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGCC 88363
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
||||| ||||| ||||| | ||| || ||||| | || || || || || || ||
Sbjct 88364 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAGC 88423
Query 68442 GTCTTGACGAATATCTGCAT 68461
|||||||| |||||||||||
Sbjct 88424 GTCTTGACAAATATCTGCAT 88443
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||||||||||| ||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 87499 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 87558
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
||||| || | | || | | || |||||||| || | ||||| || |||||
Sbjct 87559 TTGACATGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAGC 87618
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| |||||||| || |||||
Sbjct 87619 GTTTTGACGAAGATTTGCAT 87638
Score = 100 bits (110), Expect = 5e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || || | ||||||||||| | || ||||||||||| || || || |||
Sbjct 79657 CCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGCC 79716
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
||||| ||||| ||||| | ||| || ||||| | || || || || || || ||
Sbjct 79717 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAGC 79776
Query 68442 GTCTTGACGAATATCTGCAT 68461
|||||||| |||||||||||
Sbjct 79777 GTCTTGACAAATATCTGCAT 79796
Score = 100 bits (110), Expect = 5e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
||||| || ||||| | ||| |||||||| || || || |||||||| |||||||| |
Sbjct 88804 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 88863
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| ||||||||||| | | || || || | |||||| || || ||||| ||
Sbjct 88864 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGTTAGC 88923
Query 68442 GTCTTGACGAATATCTGCAT 68461
|||||||| || | ||||||
Sbjct 88924 GTCTTGACAAAGAGCTGCAT 88943
>seq254
Length=164007
Score = 96.9 bits (106), Expect = 6e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 176235 AGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCG 176294
|| |||||||||||||| | || | || |||||||| || || || | || | ||||
Sbjct 19313 AGCTGTGTGAAGATATATCGAGGACTAGCGCTGTCCTTACCGCCCTGTAAACGTGTACCG 19254
Query 176295 AATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCA 176352
||||| ||| || ||||| | |||||||||||||||||| ||||| ||||| ||||
Sbjct 19253 AATTGACCGATCGGCAGAAGGAGATTGATGTTATTCGAACCGACGTAATCTTGCGCCA 19196
>seq25738
Length=721
Score = 89.7 bits (98), Expect = 9e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 476 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 535
Query 84516 CCCACATCGGGCAGGTCGGCAGAC 84539
||| |||||||| || ||||||
Sbjct 536 CCCGCATCGGGCTGGCATGCAGAC 559
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 293 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 352
Query 84516 CCCACATCGGGCAGG 84530
||| |||||||| ||
Sbjct 353 CCCGCATCGGGCTGG 367
Score = 84.2 bits (92), Expect = 4e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || || |||| || | |||| ||||||||||
Sbjct 110 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTTTTAATCTGGCTGTCGCGGGTTCGAGC 169
Query 84516 CCCACATCGGGCAGGTCGGCAGAC 84539
||| |||||||| || ||||||
Sbjct 170 CCCGCATCGGGCTGGCATGCAGAC 193
>seq4681
Length=14152
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 13552 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 13611
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 13612 CCCGCATCGGGC 13623
>seq715
Length=83168
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 73569 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 73628
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 73629 CCCGCATCGGGC 73640
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 73849 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 73908
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 73909 CCCGCATCGGGC 73920
>seq575
Length=96907
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 3611 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 3552
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 3551 CCCGCATCGGGC 3540
>seq51
Length=344957
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|||||||| || || | || |||||||| ||||| || |||||||| ||||||||||||
Sbjct 218132 CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCC 218191
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | | || ||||| | || || || || || || |||
Sbjct 218192 TTCACATTTTCAATAGTATCCGAAGCCTCGACTTCGAGTGTTATTGTCTTACCGGTTAGG 218251
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| |||| ||| || |||||
Sbjct 218252 GTTTTGATGAAGATTTGCAT 218271
>seq2855
Length=25829
Score = 84.2 bits (92), Expect = 4e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||| |||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 25617 GCCCGGTTAGCTCGCTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 25558
Query 84516 CCCACATCGGGCAGGTCGGCAGAC 84539
||| |||||||| ||| ||||||
Sbjct 25557 CCCGCATCGGGCTGGTATGCAGAC 25534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921257091921200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |