Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq108 131 3e-25 seq1742 118 2e-21 seq560 113 8e-20 seq254 96.9 6e-15 seq25738 89.7 9e-13 seq4681 86.0 1e-11 seq715 86.0 1e-11 seq575 86.0 1e-11 seq51 86.0 1e-11 seq2855 84.2 4e-11 >seq108 Length=252163 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | || | ||| || |||||||| || ||||||||||| || || Sbjct 244252 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 244311 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | || || || || || ||||||| || || ||||| || Sbjct 244312 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 244371 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| || || || |||||| || || | | || || Sbjct 244372 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACC 244431 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || || ||||| ||||| || ||||| Sbjct 244432 TCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 244478 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||||| ||||| || || || ||||| || ||||| |||||||| Sbjct 246225 CTTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTT 246284 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || ||||| || || | || ||||||||| | ||||||||||| || || Sbjct 246285 CGCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGT 246344 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||| |||||||| Sbjct 246345 GAGGGTCTTGACGAAGATCTGCAT 246368 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || || |||||||| |||||||||||||| ||||| ||| Sbjct 246727 CCAGCGAAGATAAGGCGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCC 246786 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| |||||| ||||| | | ||| || |||| ||||| ||||| || || | Sbjct 246787 TTGACGTTCTCGATTGTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAAT 246846 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || ||||| ||||| Sbjct 246847 GTCTTCACAAATATTTGCAT 246866 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 |||| |||||||| || || | ||| || || ||||| || ||||||||||| || |||| Sbjct 247257 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 247316 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 | || ||||| || || || || | | ||| || || | ||||||||||| || | Sbjct 247317 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 247376 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 | | || || ||||| |||||||| Sbjct 247377 TCAACGTTTTCACGAAAATCTGCAT 247401 >seq1742 Length=41667 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||||||||| || | ||| |||||||||||||| || || ||||| ||||| || ||| Sbjct 31293 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 31352 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| ||||| | | ||| || || | |||||| |||||||| ||||| Sbjct 31353 TTTACATTCTCGATCGTGTCCGACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 31412 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| Sbjct 31413 GTCTTCACAAAAATTTGCAT 31432 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||||||||| || | ||| |||||||||||||| || || ||||| ||||| || ||| Sbjct 31597 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 31656 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| ||||| | | ||| || || | |||||| |||||||| ||||| Sbjct 31657 TTTACATTCTCGATCGTGTCCGACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 31716 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| Sbjct 31717 GTCTTCACAAAAATTTGCAT 31736 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||||||||| || | ||| |||||||||||||| || || ||||| ||||| || ||| Sbjct 23012 CCGGCGAATATAAGACGTTGCTGGTCGGGTGGAATACCCTCTTTGTCCTGAATTTTCGCC 22953 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| ||||| | ||| || || | |||||| |||||||| ||||| Sbjct 22952 TTTACATTCTCGATCGTGTCCAACGCTTCCACCTCAAGGGTGATCGTTTTTCCTGTGAGA 22893 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| Sbjct 22892 GTCTTCACAAAAATTTGCAT 22873 >seq560 Length=97729 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | |||||||||||||| || |||||||||||||| || || ||| Sbjct 88304 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGCC 88363 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||| ||||| | ||| || ||||| | || || || || || || || Sbjct 88364 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAGC 88423 Query 68442 GTCTTGACGAATATCTGCAT 68461 |||||||| ||||||||||| Sbjct 88424 GTCTTGACAAATATCTGCAT 88443 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||| Sbjct 87499 CCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCC 87558 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| || | | || | | || |||||||| || | ||||| || ||||| Sbjct 87559 TTGACATGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGTGAGC 87618 Query 68442 GTCTTGACGAATATCTGCAT 68461 || |||||||| || ||||| Sbjct 87619 GTTTTGACGAAGATTTGCAT 87638 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | ||||||||||| | || ||||||||||| || || || ||| Sbjct 79657 CCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGCC 79716 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||| ||||| | ||| || ||||| | || || || || || || || Sbjct 79717 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAGC 79776 Query 68442 GTCTTGACGAATATCTGCAT 68461 |||||||| ||||||||||| Sbjct 79777 GTCTTGACAAATATCTGCAT 79796 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || ||||| | ||| |||||||| || || || |||||||| |||||||| | Sbjct 88804 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 88863 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||||||||||| | | || || || | |||||| || || ||||| || Sbjct 88864 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGTTAGC 88923 Query 68442 GTCTTGACGAATATCTGCAT 68461 |||||||| || | |||||| Sbjct 88924 GTCTTGACAAAGAGCTGCAT 88943 >seq254 Length=164007 Score = 96.9 bits (106), Expect = 6e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 176235 AGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCG 176294 || |||||||||||||| | || | || |||||||| || || || | || | |||| Sbjct 19313 AGCTGTGTGAAGATATATCGAGGACTAGCGCTGTCCTTACCGCCCTGTAAACGTGTACCG 19254 Query 176295 AATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCA 176352 ||||| ||| || ||||| | |||||||||||||||||| ||||| ||||| |||| Sbjct 19253 AATTGACCGATCGGCAGAAGGAGATTGATGTTATTCGAACCGACGTAATCTTGCGCCA 19196 >seq25738 Length=721 Score = 89.7 bits (98), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 476 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 535 Query 84516 CCCACATCGGGCAGGTCGGCAGAC 84539 ||| |||||||| || |||||| Sbjct 536 CCCGCATCGGGCTGGCATGCAGAC 559 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 293 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 352 Query 84516 CCCACATCGGGCAGG 84530 ||| |||||||| || Sbjct 353 CCCGCATCGGGCTGG 367 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || || |||| || | |||| |||||||||| Sbjct 110 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTTTTAATCTGGCTGTCGCGGGTTCGAGC 169 Query 84516 CCCACATCGGGCAGGTCGGCAGAC 84539 ||| |||||||| || |||||| Sbjct 170 CCCGCATCGGGCTGGCATGCAGAC 193 >seq4681 Length=14152 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 13552 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 13611 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 13612 CCCGCATCGGGC 13623 >seq715 Length=83168 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 73569 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 73628 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 73629 CCCGCATCGGGC 73640 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 73849 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 73908 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 73909 CCCGCATCGGGC 73920 >seq575 Length=96907 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 3611 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 3552 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 3551 CCCGCATCGGGC 3540 >seq51 Length=344957 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || || | || |||||||| ||||| || |||||||| |||||||||||| Sbjct 218132 CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCC 218191 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || || | | || ||||| | || || || || || || ||| Sbjct 218192 TTCACATTTTCAATAGTATCCGAAGCCTCGACTTCGAGTGTTATTGTCTTACCGGTTAGG 218251 Query 68442 GTCTTGACGAATATCTGCAT 68461 || |||| ||| || ||||| Sbjct 218252 GTTTTGATGAAGATTTGCAT 218271 >seq2855 Length=25829 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||| |||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 25617 GCCCGGTTAGCTCGCTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 25558 Query 84516 CCCACATCGGGCAGGTCGGCAGAC 84539 ||| |||||||| ||| |||||| Sbjct 25557 CCCGCATCGGGCTGGTATGCAGAC 25534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921257091921200