Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq560 122 2e-22
seq108 122 2e-22
seq51 86.0 1e-11
>seq560
Length=97729
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||||||||||||||||||||| |||||| ||||| || || |||||||||||
Sbjct 88304 CCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGCC 88363
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || ||||| || | || || || |||||||| || |||||||| ||||| ||
Sbjct 88364 TTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAGC 88423
Query 288454 GTCTTGACGAATATCTGCAT 288473
|||||||| |||||||||||
Sbjct 88424 GTCTTGACAAATATCTGCAT 88443
Score = 120 bits (132), Expect = 7e-22
Identities = 113/143 (79%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390
||||||||||||||||||||||| || || ||| ||||| || ||||||||||||
Sbjct 79657 CCTGCGAAGATCAGACGCTGTTGG---TCGGGACGGATACCTTCCTTGTCCTGGATTTTC 79713
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || || ||||| || | || || || |||||||| || |||||||| |||||
Sbjct 79714 GCCTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTT 79773
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
|| |||||||| |||||||||||
Sbjct 79774 AGCGTCTTGACAAATATCTGCAT 79796
>seq108
Length=252163
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||| || ||||| ||| | || || |||||||||||||||||||| ||
Sbjct 244894 CCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTGCC 244953
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| |||||||| |||| || || ||| |||||||||||||| ||||| |||||||
Sbjct 244954 TTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCAAC 245013
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||||||
Sbjct 245014 GTTTTCACGAAGATCTGCAT 245033
Score = 114 bits (126), Expect = 3e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || ||||| || ||||||||| ||||| || ||||| ||||| || |||
Sbjct 246226 TTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTTC 246285
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| ||||| ||||| || | |||| | |||||||||||| ||||| || || |||||
Sbjct 246286 GCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGTG 246345
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
|| ||||||||||| ||||||||
Sbjct 246346 AGGGTCTTGACGAAGATCTGCAT 246368
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || |||||||| ||||| || ||| |||||||||||| || |||||||| ||
Sbjct 247259 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 247318
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || ||||| || | ||| || ||| || ||||| ||||| || || ||||||
Sbjct 247319 GCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGGTC 247378
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
| || || ||||| ||||||||
Sbjct 247379 AACGTTTTCACGAAAATCTGCAT 247401
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||| ||||| ||||| | ||||| || ||||| ||||| || || ||
Sbjct 248125 CCGGCGAAGATGAGACGTTGTTGGTCAGGCGGGATGCCCTCTTTGTCCTGTATCTTGGCC 248184
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| ||||| || || | ||| || || |||||||| ||||||||||| || || |||
Sbjct 248185 TTGACGTTCTCAATTGTATCTGACGCCTCCACTTCGAGAGTGATCGTCTTGCCAGTAAGA 248244
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || ||||| || |||||
Sbjct 248245 GTTTTCACGAAGATTTGCAT 248264
>seq51
Length=344957
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||||||||||||||| || || ||||| || || ||||| || || ||
Sbjct 218132 CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCC 218191
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| |||| ||| | || |||||||| || || ||||| ||||| ||
Sbjct 218192 TTCACATTTTCAATAGTATCCGAAGCCTCGACTTCGAGTGTTATTGTCTTACCGGTTAGG 218251
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| |||| ||| || |||||
Sbjct 218252 GTTTTGATGAAGATTTGCAT 218271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179175124849380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |