Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq320 87.8 2e-12 seq108 87.8 2e-12 seq31476 86.0 7e-12 seq30691 86.0 7e-12 seq27354 86.0 7e-12 seq21700 86.0 7e-12 seq10577 86.0 7e-12 seq2512 86.0 7e-12 seq1284 86.0 7e-12 seq467 86.0 7e-12 seq6 86.0 7e-12 seq17855 82.4 8e-11 >seq320 Length=140168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 96237 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 96296 Query 57067 TACTACCGAGGATTGAAT 57084 |||||||||||| || || Sbjct 96297 TACTACCGAGGACTGCAT 96314 >seq108 Length=252163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || |||| ||||||||||| || |||||||| ||||||||||| | Sbjct 245453 CCTCCTCTCAATCGCAGCACCAAATGCAGCGTAGATTCCTTTTGTATATTGTAATCTGAT 245512 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATAT 42079 ||||| || |||| || ||||||||||| || ||||| Sbjct 245513 AGAGTGCGACCGTCTTCAAGCTGCTTACCTGCAAATAT 245550 >seq31476 Length=505 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 63 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 64 TACTACCGAGGA 75 >seq30691 Length=526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 325 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 384 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 385 TACTACCGAGGA 396 >seq27354 Length=646 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 444 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 385 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 384 TACTACCGAGGA 373 >seq21700 Length=937 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 16 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 75 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 76 TACTACCGAGGACTG 90 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 318 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 377 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 378 TACTACCGAGGA 389 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 469 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 528 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 529 TACTACCGAGGA 540 >seq10577 Length=2480 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 159 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 100 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 99 TACTACCGAGGA 88 >seq2512 Length=29856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4887 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 4828 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 4827 TACTACCGAGGA 4816 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 5062 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 5003 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 5002 TACTACCGAGGA 4991 >seq1284 Length=53801 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 16654 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 16595 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 16594 TACTACCGAGGA 16583 >seq467 Length=112660 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 17629 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 17570 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 17569 TACTACCGAGGA 17558 >seq6 Length=785699 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 701162 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 701221 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 701222 TACTACCGAGGACTG 701236 >seq17855 Length=1205 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 820 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 761 Query 57067 TACTACCGAG 57076 |||||||||| Sbjct 760 TACTACCGAG 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542997484026400