Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq108 102 8e-17
seq9998 84.2 2e-11
seq6022 84.2 2e-11
>seq108
Length=252163
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||||| || ||||| || || || | || || ||||| ||
Sbjct 244478 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 244419
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | |||| || || | || || ||||| || || |||| ||
Sbjct 244418 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 244359
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | ||||||||||| ||||| |||| || ||||| ||||| |||
Sbjct 244358 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 244299
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| | || || || | ||||| |||
Sbjct 244298 ATCCAGAAGGAGTCCACTCTCCACCTCGTGCTTCGT 244263
>seq9998
Length=2827
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || || ||||| || || |||||| || || || ||||||||||| || || |
Sbjct 195 CCTCATCTCTTGAAATAAGCTCATTGCTGTGCGTTAATCCAGGCATGAGGCCACGCTTCT 254
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGA 133015
||||||||||||| || || || || |||||||| ||||
Sbjct 255 TGAGCCAAAATATCGCCGCAAAGCTTCCCGAAAAAAAGA 293
>seq6022
Length=9468
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || || ||||| || || ||||| ||||| || ||||||||||| || || |
Sbjct 7294 CCTCATCTCTTGAAATAAGCTCATTGCTATGCGTCAATCCAGGCATGAGGCCACGCTTCT 7353
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGA 133015
||||||||||||| || || || || |||||||| ||||
Sbjct 7354 TGAGCCAAAATATCGCCGCAAAGCTTCCCGAAAAAAAGA 7392
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243
|||||||||| |||||||| | |||||| || ||||||||| || || ||| | || |
Sbjct 8919 TCGAATACATCTCCGAGTGAATGTTCTCTATCATGATTTGAAAACCATAGAAGAAACGTG 8978
Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281
|||| ||||| ||||| || ||||||||||| |||
Sbjct 8979 CCTCAGGAACCTGTACTTCCTGGGCGAAACGCTCCACC 9016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499974544006400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |