Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq579 107 8e-18 seq5916 91.5 6e-13 seq4121 91.5 6e-13 seq2784 91.5 6e-13 seq108 91.5 6e-13 seq30636 87.8 7e-12 seq3704 86.0 2e-11 seq467 86.0 2e-11 seq271 86.0 2e-11 >seq579 Length=95530 Score = 107 bits (118), Expect = 8e-18 Identities = 172/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 ||||||| | | |||||||||| | ||| |||| || || || ||||| ||| Sbjct 39339 TTCAAGTGGAGTTCAAAGGTGAAAAACGAGTTTTCACTCCCGAGGAGATCTCATCGATGA 39280 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 ||||| |||||||||||||| || ||| | || ||| |||||| || || | Sbjct 39279 TTCTTGTGAAAATGAAAGAAACCGCCGAAGCGTTCATCGGTCGTCCAGTGCGAGAAGCCG 39220 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | || || || || || ||||| || ||| || || ||||| || || || || || Sbjct 39219 TCATCACAGTGCCGGCATATTTTAACGATAGCCAGCGTCAAGCCACGAAGGACGCTGGCA 39160 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 ||||| || || ||||| | ||||| || || ||||| ||||| ||||| || || | Sbjct 39159 CGATTGCCGGCTTGAATGTGTTGCGAATCATCAACGAACCCACAGCCGCTGCACTCGCCT 39100 Query 451446 ATGGACT 451452 |||| || Sbjct 39099 ATGGTCT 39093 >seq5916 Length=9773 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 78 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 135 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 136 GTCCCACAGAAGGC 149 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 403 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 460 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 461 GTCCCACAGAAGGC 474 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 728 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 785 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 786 GTCCCACAGAAGGC 799 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 78 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 135 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 136 GTCCCACAGAAGGC 149 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 78 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 135 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 136 GTCCCACAGAAGGC 149 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 403 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 460 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 461 GTCCCACAGAAGGC 474 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 403 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 460 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 461 GTCCCACAGAAGGC 474 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 728 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 785 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 786 GTCCCACAGAAGGC 799 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 728 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 785 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 786 GTCCCACAGAAGGC 799 >seq4121 Length=16675 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 8043 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 7986 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 7985 GTCCCACAGAAGGC 7972 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 8383 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 8326 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 8325 GTCCCACAGAAGGC 8312 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 10364 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 10307 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 10306 GTCCCACAGAAGGC 10293 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| ||||||||||||| Sbjct 7724 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGG 7667 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 7666 GTCCCACAGAAGGC 7653 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 8043 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 7986 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 7985 GTCCCACAGAAGGC 7972 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 8043 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 7986 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 7985 GTCCCACAGAAGGC 7972 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 8383 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 8326 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 8325 GTCCCACAGAAGGC 8312 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 8383 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 8326 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 8325 GTCCCACAGAAGGC 8312 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 10364 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 10307 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 10306 GTCCCACAGAAGGC 10293 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 10364 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 10307 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 10306 GTCCCACAGAAGGC 10293 >seq2784 Length=26471 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 244 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 187 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 186 GTCCCACAGAAGGC 173 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 244 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 187 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 186 GTCCCACAGAAGGC 173 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 244 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 187 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 186 GTCCCACAGAAGGC 173 >seq108 Length=252163 Score = 91.5 bits (100), Expect = 6e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| |||||||| || ||||| || || ||| | || Sbjct 247401 ATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTCG 247342 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| || || || || ||||||||||| || || ||||| Sbjct 247341 GATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 247282 Query 391170 CAACGTTTAATTTTCTCAGGGAA 391192 |||||| | || ||| | || || Sbjct 247281 CAACGTCTTATCTTCGCCGGTAA 247259 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || |||||| | || || || | || Sbjct 244478 ATGCAAATTTTCGTGAAGACGCTGACAGGCAAGACAATTACTTTGGAGGTGGAGGCGTCC 244419 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | ||| || |||||||||||||| || || || || ||||| Sbjct 244418 GATACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATACCGCCCGATCAG 244359 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || |||||||| || || || |||| || |||| ||||| Sbjct 244358 CAGCGACTCATCTTTGCGGGCAAACAACTGGAGGACGGCCGAACCCTGTCGGACTATAAC 244299 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 244298 ATCCAGAAGGAGTCCACTCTCCAC 244275 >seq30636 Length=528 Score = 87.8 bits (96), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 113 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 170 Query 509566 GTCCCACATAAGGCTCC 509582 |||||||| | ||| || Sbjct 171 GTCCCACAGAGGGCGCC 187 >seq3704 Length=19141 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 11109 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 11166 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 11167 GTCCCACAGAGGGC 11180 >seq467 Length=112660 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 98241 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 98298 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 98299 GTCCCACAGAGGGC 98312 >seq271 Length=154885 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 76301 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 76244 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 76243 GTCCCACAGAGGGC 76230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974915696484680