Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq299 168 5e-36 seq579 156 3e-32 seq726 116 3e-20 seq1976 87.8 1e-11 >seq299 Length=146952 Score = 168 bits (186), Expect = 5e-36 Identities = 934/1472 (63%), Gaps = 37/1472 (3%) Strand=Plus/Plus Query 517243 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 517302 |||||| || ||| ||| |||||| | ||| || || || |||| ||| || ||||| Sbjct 18135 TGTTGACTTGTCACATGCACTCACATGCATAATGCCGTTTGCGTCCAGATCGAAAGTGAC 18194 Query 517303 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 517362 ||||| ||||| || || | | || ||||| ||||| | | || |||||| Sbjct 18195 CTCAATCTGAGGAACTCCACGTGGTGCGGGTGGAATCCCACTGAGGTCGAACTTTCCCAA 18254 Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 517422 ||||| || || || | ||||| ||||| |||| ||| || | || ||| Sbjct 18255 CAGGTTATTGTCCTTCGTCATCGCACGTTCGCCCTCAAAAACTTGAATGCTGACGCCAGG 18314 Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 517482 || || || ||||| || || || | | | |||| ||||| || || || Sbjct 18315 CTGGTTGTCGGAATAGGTGGTGAACGTTTGTGTTGCTTTAGTTGGAATACGAGTATTCCT 18374 Query 517483 ATCAA-TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 517541 || | |||| ||| |||| |||||||| || ||||| | || | || || ||||||| Sbjct 18375 TTCCACTAATTTTG-TCATCATACCACCAGCCGTTTCAATTCCCAATGATAGTGGAGTGA 18433 Query 517542 CATCAACTAGGACAATATT-TTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGCT 517597 ||||||| | | || | || | | | || ||| |||| || | || | || Sbjct 18434 CATCAACCAATAGAACGTCCTTCACGGTCTT-ATC---TTGAACACCGCTCAGCACGGCA 18489 Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657 ||||||| || ||||| || ||||| || ||||||||||| | | ||| || | | Sbjct 18490 GCTTGAACTGCGGCACCGTAAGCAACTGCCTCATCAGGATTGATCGAAAGATTCAGCTGT 18549 Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCC 517716 || |||||||| || | || || | ||| ||||| || || | || || || || Sbjct 18550 TTGCCATTGAAGAATTCGCTGAGTAGCT-TCTGCACCTTCGGTATTCTAGTAGAGCCACC 18608 Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGA--ATCCAATAAAACTTTT 517774 ||| | |||||||||| | || || | | | || ||| | | | Sbjct 18609 AACAAGCACAATTTCATCGA--TGGCCTTCTTGTCGATGCGAGCATCACGAATGGCCTGC 18666 Query 517775 TCAACGGGTTCAAGACCCGCTCT---AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 517831 || || || ||||| || | | ||||| || || || |||||||||||| ||| Sbjct 18667 TCGACAGGCTCAAG---CGTTTTCCGAAACAGATCAGAGCAGAGTTCTTCGAATCGTGCT 18723 Query 517832 CTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT 517891 | ||| | | ||| | || ||||||||| | | || | ||||| | | | Sbjct 18724 CGAGTGATCTTCCCATGGAAGTCGATTCCTTCGTGAAGACTGTCGATTTCAACAATTGCT 18783 Query 517892 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG 517951 || | || || |||| | || || |||||||| ||||| || | | || | Sbjct 18784 TGCGCAGAGCTGGAGAGTGTCCTCTTGGCGCGTTCACACGCTGTTCTCAAACGACGAAGT 18843 Query 517952 GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 518011 ||| | || || ||||| || | || ||| |||| || || || | Sbjct 18844 GCTCTCGCATTTTTCTTCAAGTCCTTGCCGTAACGTCTTCTGAATTCCTCTGCAAAGTGA 18903 Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 | || | ||| | |||||||||||| || |||| | |||| || | || | | Sbjct 18904 TTAACCATACGGTCATCAAAATCTTCGCCACCCAGATGCGTATCGCCAGCTGTGGACTTC 18963 Query 518072 ACTTGGAA-AAG--TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCC 518128 |||| ||| ||| ||| || | | || || || | || || || || |||||| Sbjct 18964 ACTTCGAACAAGGATCCCTCGGCGATAGTCAGAATGGAGACGTCGAAAGTCCCTCCACCC 19023 Query 518129 ATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAA 518188 | |||||| ||||| || ||| |||| | | | || || |||||||| || || | Sbjct 19024 AGATCAAATATAAGCACGTTCTTTTCGTCAGATAGCTTCTTGTCAAGACCGTAAGCGAGC 19083 Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 || || |||||||| || || || ||||||| || ||||| ||||| | ||| Sbjct 19084 GCGGCTGCAGTTGGCTCGTTTATGATTCTCAGGGGCTTCAGACCTGCAATGATGGACGCA 19143 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCA 518308 || || ||||| || | ||| ||||| ||||| || || || || || || || || Sbjct 19144 TCCTTCGTGGCCTGGCGTTGACTGTCGTTGAAATAGGCCGGGACTGTGATTACTGCCTCG 19203 Query 518309 GTTACTTCTTTACCAATATAAGCGCT-TGCCGTTTGTTTCATTTTACTTAAAATCATTGA 518367 | || | |||| || ||| || ||| || | |||||| || | || |||||| Sbjct 19204 GCAACCGGATGGCCAAGAT-AGCTCTCTGCAGTCTCTTTCATCTTGACGAGAACCATTGA 19262 Query 518368 TGAAATTTGTTCTG--GGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATAT 518425 || || | ||| | | ||| | ||| | ||||| || ||| || | | Sbjct 19263 AGAGATCTCTTCAGGCGTGAAGA-CCCTTTTCTCGCCTTTGA-ATTCTACCTCGACGGCT 19320 Query 518426 GGTTTATTACCAACATT---AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACA 518482 || || ||| || || ||||| || ||||||| |||||| ||| || Sbjct 19321 GG---CTTGCCACTTTTCGGAACCACTTTGAAGGGCCAGTTGCGCATATCCTGTTGCACC 19377 Query 518483 CTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA 518542 | |||||| || | || || || | | || || || || || ||||| ||| Sbjct 19378 TTAGGGTCATCGAACTTCCTGCCGATAAGCCTCTTCGCGTCGAAGATCGTATTCTCAGGA 19437 Query 518543 TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAA 518602 ||| || |||| | || || ||||||||||| ||| |||| || || || || | Sbjct 19438 TTACGAGCCACTTGCTCCTTAGCCGCATCTCCAATAAGACGTTCCGTATCGGTGAACGCG 19497 Query 518603 ACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTT 518662 || | || || ||||| || ||||| ||||| |||||||| || || | ||||| Sbjct 19498 ACGAAAGAAGGTGTTGTTTTGTTGCCTTGGTCATTGGCAATAATCTCGACGTGGCCATTC 19557 Query 518663 TGCCATACACCTACACAACTAAAAGTTGTTCC 518694 || | || || ||||||||| | || || || Sbjct 19558 TGATAGACGCCGACACAACTATACGTCGTACC 19589 >seq579 Length=95530 Score = 156 bits (172), Expect = 3e-32 Identities = 373/556 (67%), Gaps = 16/556 (3%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| || | ||||| || || ||||| || || |||| ||| ||| Sbjct 39084 TTCTTGTCAAGACCATAGGCGAGTGCAGCGGCTGTGGGTTCGTTGATGATTCGCAACACA 39143 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | || ||||| | || || || || |||||||| | || ||||||||||||| Sbjct 39144 TTCAAGCCGGCAATCGTGCCAGCGTCCTTCGTGGCTTGACGCTGGCTATCGTTAAAATAT 39203 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342 || || || || || ||||| || ||| ||| || | ||||| || |||| Sbjct 39204 GCCGGCACTGTGATGACGGCTTCTCGCACTGGACGACCGATGAA--CGCTTCGGCGGTTT 39261 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG--AATATTGCTTGGATTC 518400 ||||||||| | |||||| ||||| || | || || | || | | || ||| Sbjct 39262 CTTTCATTTTCACAAGAATCATCGATGAGATCTCCTCGGGAGTGAAAACTCGTTT--TTC 39319 Query 518401 AT-TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC---TTTAAATG 518456 | ||||| | |||| || | ||||| ||| | || ||| ||| |||| Sbjct 39320 ACCTTTGAACTCC-ACTTGAACAGCCGGTTTC---CCACCTTTGGAAACGATTTTGAATG 39375 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 |||| | ||||||| || || | |||| | | | | || || | || | Sbjct 39376 GCCAATGACGCATATCTTCCTGTACTTTAGGGTCGTCCATTTTGCGGCCTATGATGCGCT 39435 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 ||||||| || || ||||| ||||| || |||||| | || | || || | Sbjct 39436 TTGCATCGAATATTGTATTTTCCGGATTTCGAGCCACTTGATCGTAAGCCGGATTACCGA 39495 Query 518577 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 518636 ||| | | || | || ||||||| ||||| || || ||||| ||| |||||||||| Sbjct 39496 TCAAACGCTCGCTTTCAGTAAATGCCACATAAGACGGTGTTGTCTTATTGCCTTGATCAT 39555 Query 518637 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTA 518696 | ||||| ||||| || ||||||| ||| |||| || |||||||| |||| || |||| Sbjct 39556 TGGCAATTATTTCCACCTTACCATATTGGAATACTCCAACACAACTGTAAGTAGTACCTA 39615 Query 518697 AATCAATACCAATAGC 518712 | || || |||| ||| Sbjct 39616 AGTCGATTCCAACAGC 39631 >seq726 Length=81827 Score = 116 bits (128), Expect = 3e-20 Identities = 173/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 |||| || ||||||||| ||||||||| ||| ||| | | ||| || |||| | || Sbjct 9805 TAACCTTGAATGGCCAGACTTTCATATCCTCTTGTACAGTCTTGTCGTTGTAATCGCGAC 9864 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || | ||||| ||||| |||| ||||| || || || | ||| | |||| Sbjct 9865 CGATAAGCCGTTTGGCATCGAAAACCGTATTCTCAGGGTTGATCGTGAGTTGGTTCTTGG 9924 Query 518565 CTGCATCTCCAATCAGATGTTC---TGTCTC---TGTAAATGAAACATATGATGGAGTTG 518618 | ||||| || |||||| |||| ||| || ||| || | |||||||||||| || Sbjct 9925 CCGCATCACCGATCAGACGTTCACCTGTATCGCTTGTGAACGCAACATATGATGGTGTGA 9984 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | |||||||| || || || ||||| ||||| || ||||||| | ||||| |||| Sbjct 9985 TACGATTACCCTGGTCGTTTGCAATGATTTCCACACGTCCATTTTTGAACACACCCACAC 10044 Query 518679 AACT 518682 |||| Sbjct 10045 AACT 10048 >seq1976 Length=37302 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| |||||| || || || || |||||| |||||||||||| || |||||| | Sbjct 1148 AAAACCGTATTGTGCGGGTTCATCGCCACTTGATTTTTGGCTGCATCGCCGATCAGACGC 1207 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || || ||||| || | |||||||| || ||||||||||||||| || Sbjct 1208 TCCGTGTCTGTGAACGCCACATATGACGGTGTTGTGCGATTACCTAGA 1255 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| |||||| || || || || |||||| |||||||||||| || |||||| | Sbjct 1814 AAAACCGTATTGTGCGGGTTCATCGCCACTTGATTTTTGGCTGCATCGCCGATCAGACGC 1873 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || || ||||| || | |||||||| || ||||||||||||||| || Sbjct 1874 TCCGTGTCTGTGAACGCCACATATGACGGTGTTGTGCGATTACCTAGA 1921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779248845347260