Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq108 114 3e-20 seq560 102 2e-16 >seq108 Length=252163 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| |||||||| || ||||||||||| || || ||||| |||||||| || || || Sbjct 248124 ACCGGCGAAGATGAGACGTTGTTGGTCAGGCGGGATGCCCTCTTTGTCCTGTATCTTGGC 248183 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||||||||||||||| || || || |||||||| || || | |||||| || || | Sbjct 248184 CTTGACGTTCTCAATTGTATCTGACGCCTCCACTTCGAGAGTGATCGTCTTGCCAGTAAG 248243 Query 195120 AGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | |||||| Sbjct 248244 AGTTTTCACGAAGATTTGCAT 248264 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| ||||||||||| || || || ||||| ||||| ||||| |||||||| || || Sbjct 246726 ACCAGCGAAGATAAGGCGCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGC 246785 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||||||||| || |||||||| |||||| || || || | || || || ||||| Sbjct 246786 CTTGACGTTCTCGATTGTGTCCGACGCTTCCACCTCCAGAGTGATAGTTTTGCCAGTCAA 246845 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || || || | |||||| Sbjct 246846 TGTCTTCACAAATATTTGCAT 246866 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || || || || | || |||| || || || Sbjct 244270 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTCC 244329 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| ||||| || || || || || || || || || |||||| Sbjct 244330 AGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTATCTTGA 244389 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || ||||| || || || || ||||| || | |||| ||||| Sbjct 244390 ATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCTTG 244449 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || ||||| | |||||| Sbjct 244450 CCTGTCAGCGTCTTCACGAAAATTTGCAT 244478 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| ||||||||||| ||||| || ||||| || || ||||| ||||| || || | Sbjct 247257 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 247316 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||||| || ||||| || ||||| |||||| || || || | || || || | Sbjct 247317 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 247376 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| ||||| | ||||| Sbjct 247377 TCAACGTTTTCACGAAAATCTGCAT 247401 >seq560 Length=97729 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||||||||| || || |||||||| || || || ||||| |||||||| ||||| Sbjct 88303 ACCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGC 88362 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| || || || |||||||| |||||||| || |||| |||||| || || | Sbjct 88363 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAG 88422 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 88423 CGTCTTGACAAATATCTGCAT 88443 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||||||||| || || |||||||| ||| | || ||||| ||||| || ||||| Sbjct 79656 ACCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGC 79715 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| || || || |||||||| |||||||| || |||| |||||| || || | Sbjct 79716 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAG 79775 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 79776 CGTCTTGACAAATATCTGCAT 79796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109030834961570