Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq108 95.1 8e-15 seq560 82.4 5e-11 >seq108 Length=252163 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||||||||| ||| |||| | || ||||| ||||| || ||||| Sbjct 244288 TCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAG 244347 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||| || |||| | |||||||| || |||||| ||| || || Sbjct 244348 ATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTATCTTGAATCTTGGCTTTCAC--AT 244405 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || ||||| || || | || || || || || || || ||||||| Sbjct 244406 TCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCA 244465 Query 34969 CAAAGATCTGCAT 34981 | || || ||||| Sbjct 244466 CGAAAATTTGCAT 244478 >seq560 Length=97729 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 |||||||| || || ||||||||||| |||| | ||||||||||| ||||||| | Sbjct 88804 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 88863 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 || ||| | | || | || | ||| || || | ||| || || || ||||| || Sbjct 88864 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGTTAGC 88923 Query 34962 GTCTTCACAAAGATCTGCAT 34981 ||||| ||||||| |||||| Sbjct 88924 GTCTTGACAAAGAGCTGCAT 88943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324508140272880