Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq579 181 9e-40
seq299 98.7 8e-15
>seq579
Length=95530
Score = 181 bits (200), Expect = 9e-40
Identities = 387/569 (68%), Gaps = 18/569 (3%)
Strand=Plus/Minus
Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036
||||||| | | |||| | || || || ||||| || || || ||||||||||| ||
Sbjct 39646 ATGTCAAGTAGTGCAGCTGTTGGAATCGACTTAGGTACTACTTACAGTTGTGTTGGAGTA 39587
Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096
| ||| ||||||| || ||||| ||||||||||||||||| || | || || || |||
Sbjct 39586 TTCCAATATGGTAAGGTGGAAATAATTGCCAATGATCAAGGCAATAAGACAACACCGTCT 39527
Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACT 550156
||||| | || || |||| || | ||| | ||| || | || | |||||| ||
Sbjct 39526 TATGTGGCATTTACTGAAAGCGAGCGTTTGATCGGTAATCCGGCTTACGATCAAGTGGCT 39467
Query 550157 GGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216
| ||||| ||||| || || ||||| || || | || || | | | | ||
Sbjct 39466 CGAAATCCGGAAAATACAATATTCGATGCAAAGCGCATCATAGGCCGCAAAATGGACGAC 39407
Query 550217 TCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT---AATGTTTCTGGA 550273
| | || |||| ||||||| |||||||| ||| |||| ||| || | |||
Sbjct 39406 CCTAAAGTACAGGAAGATATGCGTCATTGGCCATTCAAAATCGTTTCCAAAG---GTGGG 39350
Query 550274 AAACCTTATATTGAA--GCTACTCATGAAGGATCTGTTAAAC-AATTTTCA--CCAGAAC 550328
||||| | || || | ||| |||| || |||| | |||||| || ||
Sbjct 39349 AAACCGGCTGTTCAAGTGGAGTTCA--AAGG---TGAAAAACGAGTTTTCACTCCCGAGG 39295
Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388
| || ||||| ||| || | ||||||||||| |||| ||| || || | ||||
Sbjct 39294 AGATCTCATCGATGATTCTTGTGAAAATGAAAGAAACCGCCGAAGCGTTCATCGGTCGTC 39235
Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448
||| || || || || || || || ||||||||||| || || |||||||| |
Sbjct 39234 CAGTGCGAGAAGCCGTCATCACAGTGCCGGCATATTTTAACGATAGCCAGCGTCAAGCCA 39175
Query 550449 CTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507
| || || ||||| ||| ||||| || | ||||| | || || ||||| ||||| ||
Sbjct 39174 CGAAGGACGCTGGCACG-ATTGCCGGCTTGAATGTGTTGCGAATCATCAACGAACCCACA 39116
Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536
|| |||||||| || ||||| ||||| ||
Sbjct 39115 GCCGCTGCACTCGCCTATGGTCTTGACAA 39087
Score = 93.3 bits (102), Expect = 3e-13
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 552474 GATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTA 552533
|| || ||| | || || || ||| |||| || ||||| ||||| ||||| |||||
Sbjct 35860 GACAACAATAAGCTGGGCACATTTGATTTGATGGGCATTCCACCTGCACCTCGAGGAGTG 35801
Query 552534 CCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
|| |||||||| || |||||||||||||| ||||| || || ||||| ||||| ||
Sbjct 35800 CCACAAATTGAGGTCACTTTCGATATCGACGCCAACGGTATCTTGAACGTGACAGC 35745
Score = 89.7 bits (98), Expect = 4e-12
Identities = 179/263 (68%), Gaps = 12/263 (5%)
Strand=Plus/Minus
Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA---- 552170
||||| | | || |||||||| || || ||||||| ||| | | ||||| ||
Sbjct 38649 ATGAAGTGATTCTGGTTGGTGGTTCCACGCGAATTCCCAAAGTGCAAAAAATGCTAGCTG 38590
Query 552171 AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCC 552230
||||||| ||| || ||| | || ||| | | ||||| |||||||| || ||
Sbjct 38589 AGTTCTT----CAACGGCAAAGATTTGAATCATTCGATAAATCCCGATGAGGCGGTCGCA 38534
Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAA-- 552288
||||| || || ||||||| || ||||||||||| ||| |||||| ||
Sbjct 38533 TATGGGGCGGCCGTTCAAGCCGCAATTCTTTCTGGTGTTCAGGAT--AAAACTGTGAAGG 38476
Query 552289 ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTA 552348
|| | | ||||| ||||| | || || || || || | ||||| | || ||| |||
Sbjct 38475 ATGTATTGCTTGTTGATGTGGCACCCCTTTCACTCGGCATTGAAACGGCCGGCGGTGTTA 38416
Query 552349 TGACTAATCTTATCGATAGAAAT 552371
|||| ||||| || ||| |||||
Sbjct 38415 TGACGAATCTCATTGATCGAAAT 38393
>seq299
Length=146952
Score = 98.7 bits (108), Expect = 8e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 550010 GGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAAT 550069
|| || || ||||||||||| || || | || ||||| | || || ||||||||||||
Sbjct 19589 GGTACGACGTATAGTTGTGTCGGCGTCTATCAGAATGGCCACGTCGAGATTATTGCCAAT 19530
Query 550070 GATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTT 550129
|| ||||| |||| ||| || || |||| || | ||||| || || |||| | | ||
Sbjct 19529 GACCAAGGCAACAAAACAACACCTTCTTTCGTCGCGTTCACCGATACGGAACGTCTTATT 19470
Query 550130 GGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAA 550188
|| ||||| || || | |||| || |||||||| ||||| || || || || ||
Sbjct 19469 GGAGATGCGGCTAAGGAGCAAGTGGCTCGTAATCCTGAGAATACGATCTTCGACGCGAA 19411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027619032187900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |