Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq108 113 4e-20 seq560 107 2e-18 >seq108 Length=252163 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 244892 TACCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTG 244951 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || |||| | ||||||||||| ||||||||| || |||| || |||||||| | Sbjct 244952 CCTTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCA 245011 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 245012 ACGTTTTCACGAAGATCTGCAT 245033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| ||||| || ||||| |||||||| ||||||||||| || ||||| || || | Sbjct 245838 GCATACCAGCAAAGATTAAACGTTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATCT 245897 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || || | || | ||||| || | || || || || || | || ||||| | Sbjct 245898 TCGCCTTAACGTTCTCGATCGTGTCGGATGCCTCGACCTCCAGGGTAATGGTCTTGCCTG 245957 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| ||||| |||||||| Sbjct 245958 TTAAAGTTTTCACAAAGATCTGCAT 245982 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || || || || | | |||| | | || |||| ||| Sbjct 244276 TGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTCCAGTTGT 244335 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||| ||||||||||| || || || ||||||||||| || Sbjct 244336 TTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTATCTTGAATCTTG 244395 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||| || |||| ||||| || | ||| | || ||||| || Sbjct 244396 GCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCTTGCCTGTC 244455 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 244456 AGCGTCTTCACGAAAATTTGCATG 244479 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | ||||||||||| || || ||||| ||||| || ||||| || Sbjct 246225 CTTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTT 246284 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | || || || | ||| ||||| || |||| ||||| ||||| Sbjct 246285 CGCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGT 246344 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 246345 GAGGGTCTTGACGAAGATCTGCAT 246368 >seq560 Length=97729 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 |||||| || |||| ||||||||| ||||| || || ||||| || ||||| ||||| Sbjct 88303 ACCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGC 88362 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| |||| | ||||| || | |||||||| || || | ||| |||||||| | Sbjct 88363 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAG 88422 Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || |||||||||||||| |||||||| Sbjct 88423 CGTCTTGACAAATATCTGCATACCACCGCGAAGA 88456 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 |||||| || |||| ||||||||| ||||| | || ||||| || || || ||||| Sbjct 79656 ACCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGC 79715 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| |||| | ||||| || | |||||||| || || | ||| |||||||||| Sbjct 79716 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAG 79775 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || |||||||||||||| Sbjct 79776 CGTCTTGACAAATATCTGCAT 79796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||| ||||| | ||||||||||||||||| |||||||| || |||||||| || Sbjct 87497 TACCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCG 87556 Query 101388 GTTTTACAATTTCTACAGTG--TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || || || ||||| | || ||||| | || | ||||||||| || Sbjct 87557 CCTTGACA--TGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGT 87614 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || || |||||| Sbjct 87615 GAGCGTTTTGACGAAGATTTGCATG 87639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396125252020470