Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq108 113 4e-20
seq560 107 2e-18
>seq108
Length=252163
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| || || || | ||||| ||||| || || || ||||||||||| || ||||||
Sbjct 244892 TACCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTG 244951
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|| || |||| | ||||||||||| ||||||||| || |||| || |||||||| |
Sbjct 244952 CCTTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCA 245011
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| || || ||||||||
Sbjct 245012 ACGTTTTCACGAAGATCTGCAT 245033
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| ||||| || ||||| |||||||| ||||||||||| || ||||| || || |
Sbjct 245838 GCATACCAGCAAAGATTAAACGTTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATCT 245897
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| || || | || | ||||| || | || || || || || | || ||||| |
Sbjct 245898 TCGCCTTAACGTTCTCGATCGTGTCGGATGCCTCGACCTCCAGGGTAATGGTCTTGCCTG 245957
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
|||||||||| ||||| ||||||||
Sbjct 245958 TTAAAGTTTTCACAAAGATCTGCAT 245982
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || || || || || || || | | |||| | | || |||| |||
Sbjct 244276 TGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCCTCCAGTTGT 244335
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | ||||| ||||||||||| || || || ||||||||||| ||
Sbjct 244336 TTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTATCTTGAATCTTG 244395
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | ||| || |||| ||||| || | ||| | || ||||| ||
Sbjct 244396 GCTTTCACATTCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTGTCTTGCCTGTC 244455
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| || || || || || ||||||
Sbjct 244456 AGCGTCTTCACGAAAATTTGCATG 244479
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| ||||| || | ||||||||||| || || ||||| ||||| || ||||| ||
Sbjct 246225 CTTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTT 246284
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| |||| | || || || | ||| ||||| || |||| ||||| |||||
Sbjct 246285 CGCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGT 246344
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 246345 GAGGGTCTTGACGAAGATCTGCAT 246368
>seq560
Length=97729
Score = 107 bits (118), Expect = 2e-18
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388
|||||| || |||| ||||||||| ||||| || || ||||| || ||||| |||||
Sbjct 88303 ACCTGCGAAGATCAGACGCTGTTGGTCGGGTGGGATACCTTCCTTGTCTTGGATTTTCGC 88362
Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448
|| ||| |||| | ||||| || | |||||||| || || | ||| |||||||| |
Sbjct 88363 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTAAG 88422
Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482
|| || |||||||||||||| ||||||||
Sbjct 88423 CGTCTTGACAAATATCTGCATACCACCGCGAAGA 88456
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388
|||||| || |||| ||||||||| ||||| | || ||||| || || || |||||
Sbjct 79656 ACCTGCGAAGATCAGACGCTGTTGGTCGGGACGGATACCTTCCTTGTCCTGGATTTTCGC 79715
Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448
|| ||| |||| | ||||| || | |||||||| || || | ||| ||||||||||
Sbjct 79716 CTTGACATTTTCGATTGTGTCCGATGACTCCACTTCGAGTGTAATCGTCTTGCCGGTTAG 79775
Query 101449 AGTTTTTACAAATATCTGCAT 101469
|| || ||||||||||||||
Sbjct 79776 CGTCTTGACAAATATCTGCAT 79796
Score = 89.7 bits (98), Expect = 4e-13
Identities = 108/145 (74%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
||||||| ||||| | ||||||||||||||||| |||||||| || |||||||| ||
Sbjct 87497 TACCTGCGAATATGAGTCGCTGTTGATCGGGCGGGATGCCTTCCTTGTCTTGAATCTTCG 87556
Query 101388 GTTTTACAATTTCTACAGTG--TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || || || ||||| | || ||||| | || | ||||||||| ||
Sbjct 87557 CCTTGACA--TGCTGCACTGCATCAGAGGGCTCGACTTCCAACGTCAACGTTTTGCCAGT 87614
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
| ||||| || || || ||||||
Sbjct 87615 GAGCGTTTTGACGAAGATTTGCATG 87639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396125252020470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |