Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq579 197 9e-45 seq299 190 1e-42 seq108 89.7 3e-12 >seq579 Length=95530 Score = 197 bits (218), Expect = 9e-45 Identities = 392/573 (68%), Gaps = 23/573 (4%) Strand=Plus/Minus Query 474317 ATGTCCAGAATTGCAA---TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTT 474373 ||||| || | |||| |||| || || ||||| ||||||||||||||||| | || Sbjct 39646 ATGTCAAGTAGTGCAGCTGTTGGAATCGACTTAGGTACTACTTACAGTTGTGTTGGAGTA 39587 Query 474374 TGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCA 474433 | ||| ||||||| || ||||||||||||||||| ||||| |||| |||||||| || Sbjct 39586 TTCCAATATGGTAAGGTGGAAATAATTGCCAATGATCAAGGCAATAAGACAACACCGTCT 39527 Query 474434 TATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 ||||| | |||||||||| || | | | || || || | ||| | |||||| || Sbjct 39526 TATGTGGCATTTACTGAAAGCGAGCGTTTGATCGGTAATCCGGCTTACGATCAAGTGGCT 39467 Query 474494 TCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGAT 474553 ||||| | ||||| || || ||||| || | | || || || || | || || Sbjct 39466 CGAAATCCGGAAAATACAATATTCGATGCAAAGCGCATCATAGGCCGCAAAATGGACGAC 39407 Query 474554 ACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAA----GGTGATAAATGTTGGTGG 474609 | | || || ||||||||||||||||| || || | | ||| ||||| Sbjct 39406 CCTAAAGTACAGGAAGATATGCGTCATTGGCCATTCAAAATCGTTTCCAAA----GGTGG 39351 Query 474610 TAAACCATATATAGAA--GCAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAAC 474665 ||||| | | || | | | || |||||||| || | |||||| || || Sbjct 39350 GAAACCGGCTGTTCAAGTGGAGTTCA--AAGGTGAAA--AACGAGTTTTCACTCCCGAGG 39295 Query 474666 AAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACA 474723 | || || || ||| || | | ||||||||| ||||||| ||| ||| || | Sbjct 39294 AGATCTCATCGATGATTCTTGTGAAAATGAAAGAAACCGCCGAAGCGTTCATC--GGTCG 39237 Query 474724 AGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGC 474783 ||| || || || || || || || ||||||||||| ||| || |||||||| Sbjct 39236 TCCAGTGCGAGAAGCCGTCATCACAGTGCCGGCATATTTTAACGATAGCCAGCGTCAAGC 39177 Query 474784 AACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAAC 474843 || || || || || | ||||| || | ||||| || || || || || ||||| || Sbjct 39176 CACGAAGGACGCTGGCACGATTGCCGGCTTGAATGTGTTGCGAATCATCAACGAACCCAC 39117 Query 474844 AGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||| || ||||| || ||||||||||| ||||| Sbjct 39116 AGCCGCTGCACTCGCCTATGGTCTTGACAAGAA 39084 >seq299 Length=146952 Score = 190 bits (210), Expect = 1e-42 Identities = 396/583 (68%), Gaps = 24/583 (4%) Strand=Plus/Minus Query 474324 GAATTGCAA-----TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCA 474378 ||||||||| | || || || | || || || || |||||||| | || | || Sbjct 19617 GAATTGCAAGGCGGTGGGAATCGACCTCGGTACGACGTATAGTTGTGTCGGCGTCTATCA 19558 Query 474379 AAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGT 474438 ||||| | || || || ||||||||||||||||| || | ||||||||| || | || Sbjct 19557 GAATGGCCACGTCGAGATTATTGCCAATGACCAAGGCAACAAAACAACACCTTCTTTCGT 19498 Query 474439 TTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAA 474498 | || || || || |||| ||||||||||||||| ||||| | |||| || ||| Sbjct 19497 CGCGTTCACCGATACGGAACGTCTTATTGGAGATGCGGCTAAGGAGCAAGTGGCTCGTAA 19438 Query 474499 TCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCAC 474558 ||||| ||||| || || || || || || | || || | || || ||||| | | Sbjct 19437 TCCTGAGAATACGATCTTCGACGCGAAGAGGCTTATCGGCAGGAAGTTCGATGACCCTAA 19378 Query 474559 TGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGAT----AAATGTTGGTGGTAAAC 474614 || ||| |||||||| | ||||| || || ||| | ||| |||| || | Sbjct 19377 GGTGCAACAGGATATGCGCAACTGGCCCTTCAAAGTGGTTCCGAAA----AGTGGCAAGC 19322 Query 474615 CATATATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTC 474672 || | || | | | | ||| || | ||| | |||| || ||| | || || Sbjct 19321 CAGCCGTCGAGGTAGAATTCAAAGGCGAGA--AAAGGGTCTTCACGCCTGAAGAGATCTC 19264 Query 474673 TTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAA 474731 |||||||||| | | ||| |||||| | || || ||| | |||||||| || || Sbjct 19263 TTCAATGGTTCTCGTCAAGATGAAAGAGACTGCAGAGAGC-TATCTTGGCCATCCGGTTG 19205 Query 474732 CTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 | || |||||||| || || || || ||||| || || |||||| || || || || | Sbjct 19204 CCGAGGCAGTAATCACAGTCCCGGCCTATTTCAACGACAGTCAACGCCAGGCCACGAAGG 19145 Query 474792 ATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 ||||| | ||||||||||| || | | || || || || ||||| ||||||| Sbjct 19144 ATGCGTCCATCATTGCAGGTCTGAAGCCCCTGAGAATCATAAACGAGCCAACTGCAGCCG 19085 Query 474852 CACTTGCTTATGGTCTTGATAAGAA---TTCTGAC--AAAGAA 474889 | || ||||| |||||||| ||||| |||||| |||||| Sbjct 19084 CGCTCGCTTACGGTCTTGACAAGAAGCTATCTGACGAAAAGAA 19042 Score = 129 bits (142), Expect = 4e-24 Identities = 533/827 (64%), Gaps = 18/827 (2%) Strand=Plus/Minus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 |||||||| ||| | ||||| ||||| |||||||||||| | | | || |||| | Sbjct 18956 ACAGCTGGCGATACGCATCTGGGTGGCGAAGATTTTGATGACCGTATGGTTAATCAC--T 18899 Query 475425 GTGTTGAAGATTTCA--AGAGGAAAAATAAAGTTGATCTTTCA-ACATCTGCTAAAGCAT 475481 || || || |||| ||| | | ||| || ||| | | | ||| | |||| Sbjct 18898 TTGCAGAGGAATTCAGAAGACGTTACGGCAAG--GA-CTTGAAGAAAAATGCGAGAGCAC 18842 Query 475482 TAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAA 475541 | | ||| | ||||| || |||||||| || ||| | | || || || | ||| Sbjct 18841 TTCGTCGTTTGAGAACAGCGTGTGAACGCGCCAAGAGGACACTCTCCAGCTCTGCGCAAG 18782 Query 475542 CTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGG 475601 | | ||||||| | || |||| |||||||| || | || || || | | Sbjct 18781 CAATTGTTGAAATCGACAGTCTTCACGAAGGAATCGACTTCCATGGGAAGATCACTCGAG 18722 Query 475602 CTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAG 475661 | ||| ||||| | || |||||||| ||| | ||||| |||| || || || || | Sbjct 18721 CACGATTCGAAGAACTCTGCTCTGATCTGTTTCGGAAAACGCTTGAGCCTGTCGAGCAGG 18662 Query 475662 TTCTCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | | ||| || | ||||| | | | || |||||||||| ||||| || || Sbjct 18661 CCATTCGTGATGCTCGCATCGACAAGAAGGCCA-TCGATGAAATTGTGCTTGTTGGTGGC 18603 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTT--AATGGTAAAAAG 475777 || || ||||| || || | |||| ||| ||| | ||| | ||||| ||| || Sbjct 18602 TCTACTAGAATACCGAAGGTGC-AGAA--GCTACTCAGCGAATTCTTCAATGGCAAACAG 18546 Query 475778 TTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCT 475837 | ||| | ||||||||||| || ||||| || || || || || ||||| || Sbjct 18545 CTGAATCTTTCGATCAATCCTGATGAGGCAGTTGCTTACGGTGCCGCAGTTCAAGCTGCC 18486 Query 475838 ATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCA 475897 | | ||| ||| ||| | || | || || | ||||| || |||||| Sbjct 18485 GTGCTGAGCGGTGTTCAAGATAAGACCGTGAAGGACGTTCTATTGGTTGATGTCACTCCA 18426 Query 475898 CTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACT 475957 || ||||| || ||||||| | ||| || || ||||| || | | || || |||||| Sbjct 18425 CTATCATTGGGAATTGAAACGGCTGGTGGTATGATGACAAAATTAGTGGAAAGGAATACT 18366 Query 475958 CCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTA 476017 | ||| ||| ||| | || || || |||| ||||| || || || | || Sbjct 18365 CGTATTCCAACTAAAGCAACACAAACGTTCACCACCTATTCCGACAACCAGCCTGGCGTC 18306 Query 476018 ACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACT 476077 | ||| ||| | ||||| || ||| | | || || || |||||| | |||| Sbjct 18305 AGCATTCAAGTTTTTGAGGGCGAACGTGCGATGACGAAGGACAATAACCTGTTGGGAAAG 18246 Query 476078 TTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 || | || || ||||| || || || | ||||||||||| ||||| || ||||| Sbjct 18245 TTCGACCTCAGTGGGATTCCACCCGCACCACGTGGAGTTCCTCAGATTGAGGTCACTTTC 18186 Query 476138 GATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 ||| | || ||||| || ||| | |||| | ||| ||||| || || Sbjct 18185 GATCTGGACGCAAACGGCATTATGCATGTGAGTGCATGTGACAAGTC 18139 >seq108 Length=252163 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 480628 GCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCT 480687 |||| || || || ||||||||||| ||||| || || |||||||||||||| || |||| Sbjct 247257 GCTTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCT 247316 Query 480688 TTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 | ||||||| |||||| ||||| | | || || || || |||||||||| Sbjct 247317 TAGCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGG 247376 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | | || || |||||||| || Sbjct 247377 TCAACGTTTTCACGAAAATCTG 247398 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| || || || |||||||| ||||| || || || ||||| |||||||| Sbjct 246225 CTTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTT 246284 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 || ||| ||| || ||||| | || | | || | || || || |||||||||| Sbjct 246285 CGCCTTCACATTTTCGATTGTATCGGATGCTTCTACTT-CGAGTGTGATGGTTTTACCGG 246343 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| ||||| || || Sbjct 246344 TGAGGGTCTTGACGAAGATCTG 246365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266819004243080