Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq108 91.5 3e-13
>seq108
Length=252163
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| || || || | | || || || ||||| |||||||| || || || || |||
Sbjct 247259 TTACCGGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 247318
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| || ||||| |||| ||| || || ||||| ||||||||||| ||
Sbjct 247319 GCTTTGACATTTTCAATCGTATCCGACGCTTCCACCTCGAGAGTGATGGTTTTACCGGTC 247378
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|| ||||| | ||| ||||||||
Sbjct 247379 AACGTTTTCACGAAAATCTGCAT 247401
Score = 89.7 bits (98), Expect = 9e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||| || |||| | ||| || ||||| ||||| ||||||||||| || |||||
Sbjct 244892 TACCAGCGAAGATTAGGCGCTGCTGATCAGGAGGTATCCCTTCTTTATCCTGGATTTTTG 244951
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|| || || ||||| || |||| ||| ||||| || || || || || || || |
Sbjct 244952 CCTTGACGTTTTCGATAGTGTCAGACGCTTCCACTTCGAGCGTGATTGTCTTGCCGGTCA 245011
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | ||| ||||||||
Sbjct 245012 ACGTTTTCACGAAGATCTGCAT 245033
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988
||||||||| || | | ||| || |||||||| || || || || ||||| || |||
Sbjct 245311 ACCAGCAAAGATGAGCCGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGC 245370
Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048
|| ||||| || ||||| |||| || || || || |||||||||||||| |||||
Sbjct 245371 CTTCACATTCTCAATCGTATCGGACGCCTCCACCTCGAGTGTAATGGTTTTACCCGTTAA 245430
Query 172049 TGTTTTAATGAATATCTGCAT 172069
|| || | ||| || |||||
Sbjct 245431 CGTCTTCACGAAAATTTGCAT 245451
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || | || |||||| || || || || || ||||| || || || ||
Sbjct 246226 TTACCAGCAAAGATGAGTCGCTGTTGATCCGGAGGGATGCCCTCTTTGTCCTGAATCTTC 246285
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || ||||| || | ||||||||| || || ||||||||||| ||
Sbjct 246286 GCCTTCACATTTTCGATTGTATCGGATGCTTCTACTTCGAGTGTGATGGTTTTACCGGTG 246345
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| || || | ||| ||||||||
Sbjct 246346 AGGGTCTTGACGAAGATCTGCAT 246368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904777226718000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |