Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1178 111 2e-18 seq346 104 3e-16 seq1222 96.9 4e-14 seq2674 91.5 2e-12 >seq1178 Length=58056 Score = 111 bits (122), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| || || ||||| || ||||| || || | || Sbjct 22250 GCTTGGCGAGTTCTCCTGGAAGGATGAGACGAACGGCAGTTTGGATTTCACGAGAAGAGA 22191 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||| ||||| | ||||| | |||| || |||| | Sbjct 22190 TAGTTGAGCGCTTGTTGTAATGCGCTAGACGACTTGCCTCAGCTGCGATACGTTCGAAAA 22131 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| |||||||| ||||||| |||||||| || ||| ||||| || || | Sbjct 22130 CGTCGTTCACAAACGAATTCATGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGAT 22071 Query 1254523 GCACCTGCTTGAGCAC 1254538 |||||||||||||||| Sbjct 22070 GCACCTGCTTGAGCAC 22055 >seq346 Length=135079 Score = 104 bits (114), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| || || || || || ||||||||||| || | | Sbjct 43391 GCTTGGCGAGCTCTCCTGGCAGAATGAGACGAACCGCAGTCTGGATCTCACGAGAAGAAA 43332 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||| || || | ||||| ||||| | || || | | ||||||| |||| | Sbjct 43331 TCGTTGAGCGTTTATTGTACTGCGCTAGACGACTTGCTTCAGCGGCGATGCGCTCGAAAA 43272 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||| ||||| | ||||||| ||| ||| ||||| ||| || | Sbjct 43271 CGTCGTTCACGAACGAATTCATTATTGACATCGCCTTCGAGGATATGCCGGTGTCAGGAT 43212 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||||||||||| ||| | | | ||||||||| Sbjct 43211 GCACCTGCTTGAGCACACGGTAAACGTATACCGAGTACGA 43172 >seq1222 Length=56352 Score = 96.9 bits (106), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||| || || ||||| |||||||| || || | || Sbjct 47166 GCTTGGCGAGCTCTCCCGGAAGGATGAGACGAACGGCAGTCTGGATTTCACGGGAAGAGA 47107 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||| ||||| | || || | |||| |||||| |||| || |||| | Sbjct 47106 TCGTCGAGCGTTTGTTGTAATGTGCTATGCGGCTTGCCTCGACAGCGATACGCTCGAAAA 47047 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||| ||||||| |||||||| || ||| ||||| || || | Sbjct 47046 CGTCGTTCACGAACGAATTCATGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGAT 46987 Query 1254523 GCACCTGCTTGAGCAC 1254538 |||||||||||||||| Sbjct 46986 GCACCTGCTTGAGCAC 46971 >seq2674 Length=27579 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||||||||||| || ||| |||||| | ||||| | ||||||||| Sbjct 15500 GCAGCGAATTACCTCGACATAAAAGGTCTCCTCGATGTGACATGCAAAACGGTGGCCAAC 15559 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||||||||| || ||||| || || | ||| ||||| ||||| Sbjct 15560 ATGATCAAGGGCAAGTCTCCGGAGGAAATTCGAAGGACGTTTAATATCAA 15609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104536928902070