Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1178 111 2e-18
seq346 104 3e-16
seq1222 96.9 4e-14
seq2674 91.5 2e-12
>seq1178
Length=58056
Score = 111 bits (122), Expect = 2e-18
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| ||||| || | | ||| || || ||||| || ||||| || || | ||
Sbjct 22250 GCTTGGCGAGTTCTCCTGGAAGGATGAGACGAACGGCAGTTTGGATTTCACGAGAAGAGA 22191
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | ||||| ||||| | ||||| | |||| || |||| |
Sbjct 22190 TAGTTGAGCGCTTGTTGTAATGCGCTAGACGACTTGCCTCAGCTGCGATACGTTCGAAAA 22131
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||| |||||||| ||||||| |||||||| || ||| ||||| || || |
Sbjct 22130 CGTCGTTCACAAACGAATTCATGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGAT 22071
Query 1254523 GCACCTGCTTGAGCAC 1254538
||||||||||||||||
Sbjct 22070 GCACCTGCTTGAGCAC 22055
>seq346
Length=135079
Score = 104 bits (114), Expect = 3e-16
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || || || ||| || || || || || ||||||||||| || | |
Sbjct 43391 GCTTGGCGAGCTCTCCTGGCAGAATGAGACGAACCGCAGTCTGGATCTCACGAGAAGAAA 43332
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| ||| || || | ||||| ||||| | || || | | ||||||| |||| |
Sbjct 43331 TCGTTGAGCGTTTATTGTACTGCGCTAGACGACTTGCTTCAGCGGCGATGCGCTCGAAAA 43272
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||| || ||||| ||||| | ||||||| ||| ||| ||||| ||| || |
Sbjct 43271 CGTCGTTCACGAACGAATTCATTATTGACATCGCCTTCGAGGATATGCCGGTGTCAGGAT 43212
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562
|||||||||||||||| ||| | | | |||||||||
Sbjct 43211 GCACCTGCTTGAGCACACGGTAAACGTATACCGAGTACGA 43172
>seq1222
Length=56352
Score = 96.9 bits (106), Expect = 4e-14
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || || || | | ||| || || ||||| |||||||| || || | ||
Sbjct 47166 GCTTGGCGAGCTCTCCCGGAAGGATGAGACGAACGGCAGTCTGGATTTCACGGGAAGAGA 47107
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| ||| ||||| | || || | |||| |||||| |||| || |||| |
Sbjct 47106 TCGTCGAGCGTTTGTTGTAATGTGCTATGCGGCTTGCCTCGACAGCGATACGCTCGAAAA 47047
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||| || ||||| ||||||| |||||||| || ||| ||||| || || |
Sbjct 47046 CGTCGTTCACGAACGAATTCATGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGAT 46987
Query 1254523 GCACCTGCTTGAGCAC 1254538
||||||||||||||||
Sbjct 46986 GCACCTGCTTGAGCAC 46971
>seq2674
Length=27579
Score = 91.5 bits (100), Expect = 2e-12
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || || ||||||||||| || ||| |||||| | ||||| | |||||||||
Sbjct 15500 GCAGCGAATTACCTCGACATAAAAGGTCTCCTCGATGTGACATGCAAAACGGTGGCCAAC 15559
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
||||||||||||||||| || ||||| || || | ||| ||||| |||||
Sbjct 15560 ATGATCAAGGGCAAGTCTCCGGAGGAAATTCGAAGGACGTTTAATATCAA 15609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6104536928902070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |