Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq108 109 5e-19 seq51 105 6e-18 seq560 102 7e-17 >seq108 Length=252163 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||||||||| || || |||||||||||||| || Sbjct 246368 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCC 246309 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || || ||||| || |||||||| || || ||||| |||||| Sbjct 246308 GATACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAA 246249 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || | |||||||| || || Sbjct 246248 CAGCGACTCATCTTTGCTGGTAA 246226 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | |||||| | ||||||||||| || || ||||| || ||||| | Sbjct 247402 GATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTC 247343 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| |||||||| ||||| |||||||| || || ||||| Sbjct 247342 GGATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 247283 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 |||||| | ||||| ||||| || Sbjct 247282 GCAACGTCTTATCTTCGCCGGTAA 247259 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||| | ||||| || || || ||||||||||| ||||| | Sbjct 245033 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACGCTCGAAGTGGAAGCGTCT 244974 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||| ||||| || |||||||| |||||||| ||||| Sbjct 244973 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 244914 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||| || || Sbjct 244913 CAGCGCCTAATCTTCGCTGG 244894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| |||| || || || ||||| || || || || || || Sbjct 245982 ATGCAGATCTTTGTGAAAACTTTAACAGGCAAGACCATTACCCTGGAGGTCGAGGCATCC 245923 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || |||||| || || || || || || || ||||| Sbjct 245922 GACACGATCGAGAACGTTAAGGCGAA-GATCCAGGATAAGGAGGGCATTCCGCCAGATCA 245864 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||||||| |||||||| || Sbjct 245863 ACAACGTTTAATCTTTGCTGG 245843 >seq51 Length=344957 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| || ||||| ||||||||||| || || || |||||||| || || | Sbjct 218272 GATGCAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCTTC 218213 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || |||||| || ||||| || ||||| |||||||| || Sbjct 218212 GGATACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCA 218153 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || ||| ||||||| ||||| Sbjct 218152 GCAGCGTCTGATCTTCGCCGG 218132 >seq560 Length=97729 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||||||||||| || || ||||| |||||||| || | | Sbjct 79797 GATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATC 79738 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || || ||||| ||||| ||||| || | |||||| || Sbjct 79737 GGACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCA 79678 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| ||| ||||||| || || Sbjct 79677 ACAGCGTCTGATCTTCGCAGG 79657 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||||| ||||| || || ||||| |||||||| || | | Sbjct 88443 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 88384 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || ||||||||||| ||||| || || ||||| ||| Sbjct 88383 GACACAATCGAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGTATCCCACCCGACCAA 88324 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| ||||||| || || Sbjct 88323 CAGCGTCTGATCTTCGCAGG 88304 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||| |||||| ||||| | || |||||||| || || || || || || || || || | Sbjct 88947 TACCATGCAGCTCTTTGTCAAGACGCTAACGGGGAAGACGATCACCCTTGAGGTCGAGCC 88888 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 ||||||| | |||| || ||| ||||| || ||||| || || || || ||||| Sbjct 88887 TTCCGACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGA 88828 Query 24820 TCAACAACGTTTGATCTTTGCCGG 24843 || |||||| | ||||||||||| Sbjct 88827 CCAGCAACGTCTCATCTTTGCCGG 88804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449719271838800