Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq108 109 5e-19
seq51 105 6e-18
seq560 102 7e-17
>seq108
Length=252163
Score = 109 bits (120), Expect = 5e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||||||||| || || |||||||||||||| ||
Sbjct 246368 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTCGAAGTAGAAGCATCC 246309
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || || ||||| || |||||||| || || ||||| ||||||
Sbjct 246308 GATACAATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGCATCCCTCCGGATCAA 246249
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|| || | |||||||| || ||
Sbjct 246248 CAGCGACTCATCTTTGCTGGTAA 246226
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | |||||| | ||||||||||| || || ||||| || ||||| |
Sbjct 247402 GATGCAGATTTTCGTGAAAACGTTGACCGGTAAAACCATCACTCTCGAGGTGGAAGCGTC 247343
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | |||| || ||| |||||||| ||||| |||||||| || || |||||
Sbjct 247342 GGATACGATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 247283
Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846
|||||| | ||||| ||||| ||
Sbjct 247282 GCAACGTCTTATCTTCGCCGGTAA 247259
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | |||||| | ||||| || || || ||||||||||| ||||| |
Sbjct 245033 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACAATCACGCTCGAAGTGGAAGCGTCT 244974
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || ||| ||||| || |||||||| |||||||| |||||
Sbjct 244973 GACACTATCGAAAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATACCTCCTGATCAG 244914
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || | ||||| || ||
Sbjct 244913 CAGCGCCTAATCTTCGCTGG 244894
Score = 95.1 bits (104), Expect = 1e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| |||| || || || ||||| || || || || || ||
Sbjct 245982 ATGCAGATCTTTGTGAAAACTTTAACAGGCAAGACCATTACCCTGGAGGTCGAGGCATCC 245923
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | || |||||| || || || || || || || |||||
Sbjct 245922 GACACGATCGAGAACGTTAAGGCGAA-GATCCAGGATAAGGAGGGCATTCCGCCAGATCA 245864
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||||||||| |||||||| ||
Sbjct 245863 ACAACGTTTAATCTTTGCTGG 245843
>seq51
Length=344957
Score = 105 bits (116), Expect = 6e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| ||||| || ||||| ||||||||||| || || || |||||||| || || |
Sbjct 218272 GATGCAAATCTTCATCAAAACCCTAACCGGTAAGACAATAACACTCGAAGTCGAGGCTTC 218213
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | |||| || || |||||| || ||||| || ||||| |||||||| ||
Sbjct 218212 GGATACTATTGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCA 218153
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
|| ||| ||||||| |||||
Sbjct 218152 GCAGCGTCTGATCTTCGCCGG 218132
>seq560
Length=97729
Score = 102 bits (112), Expect = 7e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || ||||||||||| || || ||||| |||||||| || | |
Sbjct 79797 GATGCAGATATTTGTCAAGACGCTAACCGGCAAGACGATTACACTCGAAGTGGAGTCATC 79738
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | |||| || || || ||||| ||||| ||||| || | |||||| ||
Sbjct 79737 GGACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCGTCCCGACCA 79678
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| ||| ||||||| || ||
Sbjct 79677 ACAGCGTCTGATCTTCGCAGG 79657
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | || ||||| ||||| || || ||||| |||||||| || | |
Sbjct 88443 ATGCAGATATTTGTCAAGACGCTTACCGGCAAGACGATTACACTCGAAGTGGAGTCATCG 88384
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || || ||||||||||| ||||| || || ||||| |||
Sbjct 88383 GACACAATCGAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGTATCCCACCCGACCAA 88324
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| ||| ||||||| || ||
Sbjct 88323 CAGCGTCTGATCTTCGCAGG 88304
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759
||| |||||| ||||| | || |||||||| || || || || || || || || || |
Sbjct 88947 TACCATGCAGCTCTTTGTCAAGACGCTAACGGGGAAGACGATCACCCTTGAGGTCGAGCC 88888
Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819
||||||| | |||| || ||| ||||| || ||||| || || || || |||||
Sbjct 88887 TTCCGACACCATCGAAAACGTTAAAGTGAAGATTCAGGACAAGGAGGGTATCCCGCCCGA 88828
Query 24820 TCAACAACGTTTGATCTTTGCCGG 24843
|| |||||| | |||||||||||
Sbjct 88827 CCAGCAACGTCTCATCTTTGCCGG 88804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449719271838800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |