Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1222 143 4e-28 seq1178 143 4e-28 seq346 138 2e-26 seq2700 122 1e-21 seq2579 118 2e-20 seq2674 91.5 2e-12 >seq1222 Length=56352 Score = 143 bits (158), Expect = 4e-28 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||| ||||| || || || ||| |||| || || || | | Sbjct 47205 TGTATTTGGTAACAGCCTTGGTTCCCTCGGATACCGCATGCTTGGCGAGCTCTCCCGGAA 47146 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || ||||| |||||||| || |||| |||||| ||| ||||| Sbjct 47145 GGATGAGACGAACGGCAGTCTGGATTTCACGGGAAGAGATCGTCGAGCGTTTGTTGTAAT 47086 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||||| |||||| |||| || |||| | |||||| || ||||| |||| Sbjct 47085 GTGCTATGCGGCTTGCCTCGACAGCGATACGCTCGAAAACGTCGTTCACGAACGAATTCA 47026 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| ||| ||| ||||| || || ||||||||||||||||| || Sbjct 47025 TGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGATGCACCTGCTTGAGCACACGGT 46966 Query 1485710 AAAC 1485713 |||| Sbjct 46965 AAAC 46962 >seq1178 Length=58056 Score = 143 bits (158), Expect = 4e-28 Identities = 186/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| |||||||| ||||| || || || ||| |||| ||||| || | | | Sbjct 22287 TATTTGGTGACAGCCTTGGTTCCCTCGGATACCGCATGCTTGGCGAGTTCTCCTGGAAGG 22228 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || || || ||||| || ||||| || || | ||| || ||||||||| || Sbjct 22227 ATGAGACGAACGGCAGTTTGGATTTCACGAGAAGAGATAGTTGAGCGCTTGTTGTAATGC 22168 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || | ||||| | |||| || |||| | |||||| |||||||| |||||| Sbjct 22167 GCTAGACGACTTGCCTCAGCTGCGATACGTTCGAAAACGTCGTTCACAAACGAATTCATG 22108 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 |||||||||| ||| ||| ||||| || || ||||||||||||||||| || Sbjct 22107 ATCGACATCGCTTTCGAGGATATGCCGGTATCCGGATGCACCTGCTTGAGCACACGATAG 22048 Query 1485712 ACAAAGGACGAGTACGA 1485728 ||| | ||||||||| Sbjct 22047 ACATATACCGAGTACGA 22031 >seq346 Length=135079 Score = 138 bits (152), Expect = 2e-26 Identities = 187/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||||||||| || ||||| || || || ||| |||| || || || ||| Sbjct 43428 TACTTGGTGACGGCCTTAGTCCCCTCCGATACCGCATGCTTGGCGAGCTCTCCTGGCAGA 43369 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-G 1485590 || || || || || ||||||||||| || | ||||| ||| || || || | | Sbjct 43368 ATGAGACGAACCGCAGTCTGGATCTCACGAGAAGAAATCGTTGAGCGTTTATT-GTACTG 43310 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||| || || | || || | | ||||||| |||| | |||||| || ||||| ||||| Sbjct 43309 CGCTAGACGACTTGCTTCAGCGGCGATGCGCTCGAAAACGTCGTTCACGAACGAATTCAT 43250 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||||||| || ||| ||||| ||| || ||||||||||||||||| ||| Sbjct 43249 TATTGACATCGCCTTCGAGGATATGCCGGTGTCAGGATGCACCTGCTTGAGCACACGGTA 43190 Query 1485711 AACAAAGGACGAGTACGA 1485728 ||| | ||||||||| Sbjct 43189 AACGTATACCGAGTACGA 43172 >seq2700 Length=27275 Score = 122 bits (134), Expect = 1e-21 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || || || ||| | ||||| || || ||| Sbjct 8774 TGTACTTGGTGACGGCCTTTGTGCCCTCAGATACTGCATGCTTAGCCAGCTCTCCAGGCA 8833 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || |||||||| || || | |||||| || ||||| | Sbjct 8834 GGATAAGACGAACCGCAGTCTGGATTTCACGAGATGAGATCGTCGACCGTTTGTTGTAGT 8893 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| | || || | | || || |||| | |||||| ||||| || |||| Sbjct 8894 GGGCAAGGCGACTCGCTTCAGCAGCAATCCGTTCGAAGACGTCGTTCACAAATGAATTCA 8953 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || || || ||| |||||| ||||||||||| | ||| Sbjct 8954 TGATCGACATTGCCTTCGAAGATATTCCCGTGTCGGGATGCACCTGCTTCAACAC 9008 >seq2579 Length=28830 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || || || ||| | ||||| || || ||| Sbjct 26529 TGTACTTGGTGACGGCCTTTGTGCCCTCAGATACTGCATGCTTAGCCAGCTCTCCAGGCA 26470 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || |||||||| || || | |||||| || ||||| | Sbjct 26469 GGATAAGACGAACCGCAGTCTGGATTTCACGAGATGAGATCGTCGACCGTTTGTTGTAGT 26410 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| | || || | | || || |||| | |||||| ||||| || |||| Sbjct 26409 GGGCAAGGCGACTCGCTTCAGCAGCAATCCGTTCGAAGACGTCGTTCACAAATGAATTCA 26350 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || || || ||| ||||| ||||||||||| | ||| Sbjct 26349 TGATCGACATTGCCTTCGAAGATATTCCCGTATCGGGATGCACCTGCTTCAACAC 26295 >seq2674 Length=27579 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || || ||||||||||| || ||||||||| || ||||| || ||||||||| Sbjct 15500 GCAGCGAATTACCTCGACATAAAAGGTCTCCTCGATGTGACATGCAAAACGGTGGCCAAC 15559 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAA 2035756 | |||||||||||||| || ||||| || || | ||| ||||| ||||| Sbjct 15560 ATGATCAAGGGCAAGTCTCCGGAGGAAATTCGAAGGACGTTTAATATCAA 15609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912873262670690