Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1222 143 4e-28
seq1178 143 4e-28
seq346 138 2e-26
seq2700 122 1e-21
seq2579 118 2e-20
seq2674 91.5 2e-12
>seq1222
Length=56352
Score = 143 bits (158), Expect = 4e-28
Identities = 178/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| ||||| || |||||||| ||||| || || || ||| |||| || || || | |
Sbjct 47205 TGTATTTGGTAACAGCCTTGGTTCCCTCGGATACCGCATGCTTGGCGAGCTCTCCCGGAA 47146
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||| || || ||||| |||||||| || |||| |||||| ||| |||||
Sbjct 47145 GGATGAGACGAACGGCAGTCTGGATTTCACGGGAAGAGATCGTCGAGCGTTTGTTGTAAT 47086
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || | ||||| |||||| |||| || |||| | |||||| || ||||| ||||
Sbjct 47085 GTGCTATGCGGCTTGCCTCGACAGCGATACGCTCGAAAACGTCGTTCACGAACGAATTCA 47026
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||||||||||| ||| ||| ||||| || || ||||||||||||||||| ||
Sbjct 47025 TGATCGACATCGCTTTCGAGGATATGCCGGTATCCGGATGCACCTGCTTGAGCACACGGT 46966
Query 1485710 AAAC 1485713
||||
Sbjct 46965 AAAC 46962
>seq1178
Length=58056
Score = 143 bits (158), Expect = 4e-28
Identities = 186/257 (72%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
|| |||||||| |||||||| ||||| || || || ||| |||| ||||| || | | |
Sbjct 22287 TATTTGGTGACAGCCTTGGTTCCCTCGGATACCGCATGCTTGGCGAGTTCTCCTGGAAGG 22228
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
|| || || ||||| || ||||| || || | ||| || ||||||||| ||
Sbjct 22227 ATGAGACGAACGGCAGTTTGGATTTCACGAGAAGAGATAGTTGAGCGCTTGTTGTAATGC 22168
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
|| || || | ||||| | |||| || |||| | |||||| |||||||| ||||||
Sbjct 22167 GCTAGACGACTTGCCTCAGCTGCGATACGTTCGAAAACGTCGTTCACAAACGAATTCATG 22108
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711
|||||||||| ||| ||| ||||| || || ||||||||||||||||| ||
Sbjct 22107 ATCGACATCGCTTTCGAGGATATGCCGGTATCCGGATGCACCTGCTTGAGCACACGATAG 22048
Query 1485712 ACAAAGGACGAGTACGA 1485728
||| | |||||||||
Sbjct 22047 ACATATACCGAGTACGA 22031
>seq346
Length=135079
Score = 138 bits (152), Expect = 2e-26
Identities = 187/258 (72%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
||||||||||||||||| || ||||| || || || ||| |||| || || || |||
Sbjct 43428 TACTTGGTGACGGCCTTAGTCCCCTCCGATACCGCATGCTTGGCGAGCTCTCCTGGCAGA 43369
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-G 1485590
|| || || || || ||||||||||| || | ||||| ||| || || || | |
Sbjct 43368 ATGAGACGAACCGCAGTCTGGATCTCACGAGAAGAAATCGTTGAGCGTTTATT-GTACTG 43310
Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650
||| || || | || || | | ||||||| |||| | |||||| || ||||| |||||
Sbjct 43309 CGCTAGACGACTTGCTTCAGCGGCGATGCGCTCGAAAACGTCGTTCACGAACGAATTCAT 43250
Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710
|| ||||||| || ||| ||||| ||| || ||||||||||||||||| |||
Sbjct 43249 TATTGACATCGCCTTCGAGGATATGCCGGTGTCAGGATGCACCTGCTTGAGCACACGGTA 43190
Query 1485711 AACAAAGGACGAGTACGA 1485728
||| | |||||||||
Sbjct 43189 AACGTATACCGAGTACGA 43172
>seq2700
Length=27275
Score = 122 bits (134), Expect = 1e-21
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||||||||| || ||||| || || || ||| | ||||| || || |||
Sbjct 8774 TGTACTTGGTGACGGCCTTTGTGCCCTCAGATACTGCATGCTTAGCCAGCTCTCCAGGCA 8833
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||| || || || || |||||||| || || | |||||| || ||||| |
Sbjct 8834 GGATAAGACGAACCGCAGTCTGGATTTCACGAGATGAGATCGTCGACCGTTTGTTGTAGT 8893
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || ||||| | || || | | || || |||| | |||||| ||||| || ||||
Sbjct 8894 GGGCAAGGCGACTCGCTTCAGCAGCAATCCGTTCGAAGACGTCGTTCACAAATGAATTCA 8953
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||| | || || || ||| |||||| ||||||||||| | |||
Sbjct 8954 TGATCGACATTGCCTTCGAAGATATTCCCGTGTCGGGATGCACCTGCTTCAACAC 9008
>seq2579
Length=28830
Score = 118 bits (130), Expect = 2e-20
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||||||||| || ||||| || || || ||| | ||||| || || |||
Sbjct 26529 TGTACTTGGTGACGGCCTTTGTGCCCTCAGATACTGCATGCTTAGCCAGCTCTCCAGGCA 26470
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||| || || || || |||||||| || || | |||||| || ||||| |
Sbjct 26469 GGATAAGACGAACCGCAGTCTGGATTTCACGAGATGAGATCGTCGACCGTTTGTTGTAGT 26410
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || ||||| | || || | | || || |||| | |||||| ||||| || ||||
Sbjct 26409 GGGCAAGGCGACTCGCTTCAGCAGCAATCCGTTCGAAGACGTCGTTCACAAATGAATTCA 26350
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||||||||| | || || || ||| ||||| ||||||||||| | |||
Sbjct 26349 TGATCGACATTGCCTTCGAAGATATTCCCGTATCGGGATGCACCTGCTTCAACAC 26295
>seq2674
Length=27579
Score = 91.5 bits (100), Expect = 2e-12
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|| || || ||||||||||| || ||||||||| || ||||| || |||||||||
Sbjct 15500 GCAGCGAATTACCTCGACATAAAAGGTCTCCTCGATGTGACATGCAAAACGGTGGCCAAC 15559
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAA 2035756
| |||||||||||||| || ||||| || || | ||| ||||| |||||
Sbjct 15560 ATGATCAAGGGCAAGTCTCCGGAGGAAATTCGAAGGACGTTTAATATCAA 15609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7912873262670690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |