Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq108 98.7 6e-16 seq560 91.5 1e-13 >seq108 Length=252163 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| |||||||||||||| ||| | || | || Sbjct 244267 AGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTTCGGCCGTCC 244326 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||| || || || ||||| ||||| ||||| || |||| | |||||||| || Sbjct 244327 TCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGTATACCCTCCTTATCT 244386 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | || ||||| || || | || || | Sbjct 244387 TGAATCTTGGCTTTCAC--ATTCTCGATAGTATCGGACGCCTCCACCTCCAAAGTAATTG 244444 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || || ||||| || || || |||||| Sbjct 244445 TCTTGCCTGTCAGCGTCTTCACGAAAATTTGCATG 244479 >seq560 Length=97729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||| ||||| || ||||||||||| |||| | ||||||||||| | || || | Sbjct 88804 CCGGCAAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCACT 88863 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | | || | || | |||||| |||| ||| || ||||| ||||| || Sbjct 88864 TTAACGTTTTCGATGGTGTCGGAAGGCTCGACCTCAAGGGTGATCGTCTTCCCCGTTAGC 88923 Query 34958 GTCTTTACAAAGATCTGCATGATAG 34982 ||||| ||||||| ||||||| ||| Sbjct 88924 GTCTTGACAAAGAGCTGCATGGTAG 88948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325566930928490