Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq108 102 6e-17 >seq108 Length=252163 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||| | || || ||||| || || || |||||||| |||| Sbjct 244252 CCTCCGCGAAGACGAAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 244311 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || ||||||||||| ||| | || | || |||||||| ||||| Sbjct 244312 AGGGTTCGGCCGTCCTCCAGTTGTTTGCCCGCAAAGATGAGTCGCTGCTGATCGGGCGGT 244371 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| || ||||| ||| || | ||| ||| | || | ||| || || || || Sbjct 244372 ATACCCTCCTTATCTTG-AATCTTGGCTTTCACATTCTCGATAGTATCGGACGCCTCCAC 244430 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || ||||| || | || || || || || ||||| Sbjct 244431 CTCCAAAGTAATTGTCTTGCCTGTCAGCGTCTTCACGAAAATTTGCAT 244478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385070326021110