Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq299 167 2e-35
seq579 165 6e-35
seq726 107 1e-17
>seq299
Length=146952
Score = 167 bits (184), Expect = 2e-35
Identities = 931/1469 (63%), Gaps = 31/1469 (2%)
Strand=Plus/Plus
Query 281410 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 281469
|||||| || ||| ||| |||||| | ||| || || || |||| ||| || |||||
Sbjct 18135 TGTTGACTTGTCACATGCACTCACATGCATAATGCCGTTTGCGTCCAGATCGAAAGTGAC 18194
Query 281470 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 281529
||||| ||||| || || | | || ||||| ||||| | | || ||||||
Sbjct 18195 CTCAATCTGAGGAACTCCACGTGGTGCGGGTGGAATCCCACTGAGGTCGAACTTTCCCAA 18254
Query 281530 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 281589
||||| || || || | ||||| ||||| |||| ||| || | || |||
Sbjct 18255 CAGGTTATTGTCCTTCGTCATCGCACGTTCGCCCTCAAAAACTTGAATGCTGACGCCAGG 18314
Query 281590 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 281649
|| || || ||||| || || || | | | |||| ||||| || || ||
Sbjct 18315 CTGGTTGTCGGAATAGGTGGTGAACGTTTGTGTTGCTTTAGTTGGAATACGAGTATTCCT 18374
Query 281650 ATCAA-TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 281708
|| | |||| ||| |||| ||||||||||| ||||| | || | || || |||||||
Sbjct 18375 TTCCACTAATTTTG-TCATCATACCACCAGCCGTTTCAATTCCCAATGATAGTGGAGTGA 18433
Query 281709 CATCAACTAGGACAATAT-TTTGAAGTTTTTCATCAGTTTGACCAAC---AAGAATAGCT 281764
||||||| | | || | || | | | || ||| |||| || | || | ||
Sbjct 18434 CATCAACCAATAGAACGTCCTTCACGGTCTT-ATC---TTGAACACCGCTCAGCACGGCA 18489
Query 281765 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 281824
||||||| || ||||| || ||||| || ||||||||||| | | ||| || | |
Sbjct 18490 GCTTGAACTGCGGCACCGTAAGCAACTGCCTCATCAGGATTGATCGAAAGATTCAGCTGT 18549
Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 281883
|| |||||||| || | || || | ||| ||||| || || | || || || ||
Sbjct 18550 TTGCCATTGAAGAATTCGCTGAGTAGCT-TCTGCACCTTCGGTATTCTAGTAGAGCCACC 18608
Query 281884 AACTAATACAATTTCATGCACCTGTGAT--TTATCCAGTTTTGAATCCAATAAAACTTTT 281941
||| | |||||||||| | || | || || | | ||| | | |
Sbjct 18609 AACAAGCACAATTTCATCGA--TGGCCTTCTTGTCGATGCGAGCATCACGAATGGCCTGC 18666
Query 281942 TCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTA 282001
|| || || ||||| | ||||| || || || |||||||||||| |||| |
Sbjct 18667 TCGACAGGCTCAAGCGTTTTCCGAAACAGATCAGAGCAGAGTTCTTCGAATCGTGCTCGA 18726
Query 282002 GTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGA 282061
|| | | ||| | || ||||||||| | | || | ||||| | | |||
Sbjct 18727 GTGATCTTCCCATGGAAGTCGATTCCTTCGTGAAGACTGTCGATTTCAACAATTGCTTGC 18786
Query 282062 GTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT 282121
| || || |||| | || || |||||||| ||||| || | | || | |||
Sbjct 18787 GCAGAGCTGGAGAGTGTCCTCTTGGCGCGTTCACACGCTGTTCTCAAACGACGAAGTGCT 18846
Query 282122 TTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT 282181
| || || ||||| || | || ||| |||| || || || | |
Sbjct 18847 CTCGCATTTTTCTTCAAGTCCTTGCCGTAACGTCTTCTGAATTCCTCTGCAAAGTGATTA 18906
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
|| | ||| | |||||||||||| || |||| | |||| || | || | | |||
Sbjct 18907 ACCATACGGTCATCAAAATCTTCGCCACCCAGATGCGTATCGCCAGCTGTGGACTTCACT 18966
Query 282242 TGGAA-AAG--TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298
| ||| ||| ||| || | | || || || | || || || || ||||||| |
Sbjct 18967 TCGAACAAGGATCCCTCGGCGATAGTCAGAATGGAGACGTCGAAAGTCCCTCCACCCAGA 19026
Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358
||||| ||||| || ||| |||| | | | || || |||||||| || || | ||
Sbjct 19027 TCAAATATAAGCACGTTCTTTTCGTCAGATAGCTTCTTGTCAAGACCGTAAGCGAGCGCG 19086
Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418
|| |||||||| || || || ||||||| || ||||| ||||| | |||||
Sbjct 19087 GCTGCAGTTGGCTCGTTTATGATTCTCAGGGGCTTCAGACCTGCAATGATGGACGCATCC 19146
Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478
|| ||||| || | ||| ||||| ||||| || || || || || || || || |
Sbjct 19147 TTCGTGGCCTGGCGTTGACTGTCGTTGAAATAGGCCGGGACTGTGATTACTGCCTCGGCA 19206
Query 282479 ACTTCTTTTCCAATATAAGCGCT-TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537
|| | |||| || ||| || ||| || | |||||| || | || |||||| ||
Sbjct 19207 ACCGGATGGCCAAGAT-AGCTCTCTGCAGTCTCTTTCATCTTGACGAGAACCATTGAAGA 19265
Query 282538 AATTTGTTCTG--GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGT 282595
|| | ||| | | ||| | ||| | ||||| || ||| || | |||
Sbjct 19266 GATCTCTTCAGGCGTGAAGA-CCCTTTTCTCGCCTTTGA-ATTCTACCTCGACGGCTGG- 19322
Query 282596 TTATTACCAACATT---AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTT 282652
|| ||| || || ||||| || ||||| | |||||| ||| || |
Sbjct 19323 --CTTGCCACTTTTCGGAACCACTTTGAAGGGCCAGTTGCGCATATCCTGTTGCACCTTA 19380
Query 282653 TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTA 282712
|||||| || | || || || | | || || || || || ||||| ||||||
Sbjct 19381 GGGTCATCGAACTTCCTGCCGATAAGCCTCTTCGCGTCGAAGATCGTATTCTCAGGATTA 19440
Query 282713 ACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACA 282772
|| |||| | || || ||||||||||| ||| |||| || || || || | ||
Sbjct 19441 CGAGCCACTTGCTCCTTAGCCGCATCTCCAATAAGACGTTCCGTATCGGTGAACGCGACG 19500
Query 282773 TATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGC 282832
| || || ||||| || ||||| ||||| |||||||| || || | ||||| ||
Sbjct 19501 AAAGAAGGTGTTGTTTTGTTGCCTTGGTCATTGGCAATAATCTCGACGTGGCCATTCTGA 19560
Query 282833 CATACACCTACACAACTAAAAGTTGTTCC 282861
| || || ||||||||| | || || ||
Sbjct 19561 TAGACGCCGACACAACTATACGTCGTACC 19589
>seq579
Length=95530
Score = 165 bits (182), Expect = 6e-35
Identities = 375/556 (67%), Gaps = 16/556 (3%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || ||||||||||| || | ||||| || || ||||| || || |||| ||| |||
Sbjct 39084 TTCTTGTCAAGACCATAGGCGAGTGCAGCGGCTGTGGGTTCGTTGATGATTCGCAACACA 39143
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| | || ||||| | || || || || |||||||| | || |||||||||||||
Sbjct 39144 TTCAAGCCGGCAATCGTGCCAGCGTCCTTCGTGGCTTGACGCTGGCTATCGTTAAAATAT 39203
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509
|| || || || || ||||| ||| ||| || || | ||||| || ||||
Sbjct 39204 GCCGGCACTGTGATGACGGCTTCTCGCACTGGACGACCGATGAA--CGCTTCGGCGGTTT 39261
Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG--AATATTGCTTGGATTC 282567
||||||||| | |||||| ||||| || | || |||| || | | || |||
Sbjct 39262 CTTTCATTTTCACAAGAATCATCGATGAGATCTCCTCGGGAGTGAAAACTCGTTT--TTC 39319
Query 282568 AT-TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC---TTTAAATG 282623
| ||||| | |||| || | ||||| ||| | || ||| ||| ||||
Sbjct 39320 ACCTTTGAACTCC-ACTTGAACAGCCGGTTTC---CCACCTTTGGAAACGATTTTGAATG 39375
Query 282624 GCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 282683
|||||| ||||||| || || | |||| | | | | || || | || |
Sbjct 39376 GCCAATGACGCATATCTTCCTGTACTTTAGGGTCGTCCATTTTGCGGCCTATGATGCGCT 39435
Query 282684 TTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAA 282743
||||||| || || ||||| ||||| || |||||| | || | || || |
Sbjct 39436 TTGCATCGAATATTGTATTTTCCGGATTTCGAGCCACTTGATCGTAAGCCGGATTACCGA 39495
Query 282744 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 282803
||| | | || | || ||||||| ||||| || || ||||| ||| ||||||||||
Sbjct 39496 TCAAACGCTCGCTTTCAGTAAATGCCACATAAGACGGTGTTGTCTTATTGCCTTGATCAT 39555
Query 282804 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTA 282863
| ||||| ||||| || ||||||| ||| |||| || |||||||| |||| || ||||
Sbjct 39556 TGGCAATTATTTCCACCTTACCATATTGGAATACTCCAACACAACTGTAAGTAGTACCTA 39615
Query 282864 AATCAATACCAATAGC 282879
| || || |||| |||
Sbjct 39616 AGTCGATTCCAACAGC 39631
>seq726
Length=81827
Score = 107 bits (118), Expect = 1e-17
Identities = 171/244 (70%), Gaps = 6/244 (2%)
Strand=Plus/Plus
Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671
|||| || |||||||| ||||||||| ||| ||| | | ||| || |||| | ||
Sbjct 9805 TAACCTTGAATGGCCAGACTTTCATATCCTCTTGTACAGTCTTGTCGTTGTAATCGCGAC 9864
Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731
| || | ||||| ||||| |||| ||||| || || | | ||| | ||||
Sbjct 9865 CGATAAGCCGTTTGGCATCGAAAACCGTATTCTCAGGGTTGATCGTGAGTTGGTTCTTGG 9924
Query 282732 CTGCATCTCCAATCAGATGTTC---TGTCTC---TGTAAATGAAACATATGATGGAGTTG 282785
| ||||| || |||||| |||| ||| || ||| || | |||||||||||| ||
Sbjct 9925 CCGCATCACCGATCAGACGTTCACCTGTATCGCTTGTGAACGCAACATATGATGGTGTGA 9984
Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845
| |||||||| || || || ||||| ||||| || ||||||| | ||||| ||||
Sbjct 9985 TACGATTACCCTGGTCGTTTGCAATGATTTCCACACGTCCATTTTTGAACACACCCACAC 10044
Query 282846 AACT 282849
||||
Sbjct 10045 AACT 10048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739073573006460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |